Table 6.
Short target site duplications (TSDs) with or without allowing nucleotide substitutions
| L1 | Alu | ||||
|---|---|---|---|---|---|
| Full | Trun | Inv | Full | Trun | |
| 5-bp TSD in relaxed criterion*/ 5-bp TSD in strict criterion* |
0/3 (0%) |
36/56 (64%) |
0/4 (0%) |
13/51 (25%) |
5/18 (28%) |
| 6-bp TSD in relaxed criterion*/ 6-bp TSD in strict criterion* |
0/4 (0%) |
51/64 (80%) |
0/6 (0%) |
14/69 (20%) |
6/26 (23%) |
*TSD in relaxed criterion allows 1-bp substitution sandwiched by ≥2-bp homologous nucleotides, but TSD in strict criterion does not.
Full, full-length; Trun, 5'-truncated; Inv, 5'-inverted.