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. 2010 Aug 4;99(3):924–932. doi: 10.1016/j.bpj.2010.05.009

Table 2.

Summary of pKa values for the denatured states of WT and K12M NTL9

Residue Frag WT
K12M
D D1 D D1 D2
Asp8 3.84 3.22 3.18 3.80 4.23 3.42
Glu17 4.11 3.93 3.88 4.11 4.11 4.20
Asp23 4.11 3.95 4.02 3.91 3.87 4.04
Glu38 4.63 3.86 3.79 4.11 4.11 4.15
Glu48 4.31 4.50 4.48 4.74 4.99 4.58
Glu54 4.32 4.16 4.16 4.25 4.29 4.23

Conformational clusters D1 and D2 are defined in the main text.

Measured pKa for the fragment peptides (31,32), which were used to calibrate the denatured-state pKa (see main text and Table S1). Based on our earlier work (34), I estimated a SD of 0.16 pH units for the calculated pKa.

All conformations sampled from the last 50 ns simulations.