Table 2.
Summary of pKa values for the denatured states of WT and K12M NTL9
| Residue | Frag∗ | WT |
K12M |
|||
|---|---|---|---|---|---|---|
| D† | D1 | D† | D1 | D2 | ||
| Asp8 | 3.84 | 3.22 | 3.18 | 3.80 | 4.23 | 3.42 |
| Glu17 | 4.11 | 3.93 | 3.88 | 4.11 | 4.11 | 4.20 |
| Asp23 | 4.11 | 3.95 | 4.02 | 3.91 | 3.87 | 4.04 |
| Glu38 | 4.63 | 3.86 | 3.79 | 4.11 | 4.11 | 4.15 |
| Glu48 | 4.31 | 4.50 | 4.48 | 4.74 | 4.99 | 4.58 |
| Glu54 | 4.32 | 4.16 | 4.16 | 4.25 | 4.29 | 4.23 |
Conformational clusters D1 and D2 are defined in the main text.
Measured pKa for the fragment peptides (31,32), which were used to calibrate the denatured-state pKa (see main text and Table S1). Based on our earlier work (34), I estimated a SD of 0.16 pH units for the calculated pKa.
All conformations sampled from the last 50 ns simulations.