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. Author manuscript; available in PMC: 2011 Jun 1.
Published in final edited form as: Biol Blood Marrow Transplant. 2010 Jan 29;16(6):751–771. doi: 10.1016/j.bbmt.2010.01.012

Table 5. Functional categories of 401 CD8+ TE-related stem cell genes (See gene symbols and identification# in Table 3 and Table 4).

Category Gene Symbols
1. Cell cycle regulation
Cell cycle (35) Ccna2, Cdca5, Ccnb1, Sgol1, E2f8, Chek1, Cks1b, Cdkn1a, Ncaph, Plk1, Aspm, Ect2, Cdkn2c, Gmnn, Ccne1, Syce2, Cdc45l, Cdkn2b, Cdc25c, Pola1, Aurka, Ccnf, Gsg2, Dlg7, Cdkn2a, Nfatc1, Mybl2, Ran, Ccng1, Erh, Rb1, Psmd1, Cops5, Mapre1, Rap1a
2. Resistance to stress
DNA replication / repair (34) Rrm2, Cdc6, Il1rl1, Dtl, Rad51, Uhrf1, Pttg1, Dna2l, Lig1, Rpa2, Rfc3, Rrm1, Mcm5, Smc2, Fen1, Prim1, Mcm2, Hmgn2, Mcm7, Prim2, Mcm3, Rfc5, Mcm4, Orc6l, Rfc4, Recql, Rpa3, Smc6, Brca2, Blm, Topbp1, Hmgb1, Dbf4, Ube2n
Ubiquitin / Proteolysis / Proteasome (20) Cdc20, Coq7, Nedd4, Capn2, Xpnpep1, Ide, Coq3, Psma1, Psmb1, Ube2l3, Psmb2, Blmh, Ube2t, Psmb4, Psmc2, Psmb5, Psmd6, Psma3, Psma5, Ube2e3
Metabolism (27) Gldc, Gsto1, Brca1, Bcat1, Myo5a, Gpd2, Lycat, Gcat, Shmt1, Uxs1, Azin1, Pkm2, Idh3a, Gyg, Hmgcr, Rpe, Pfkfb1, Sdhb, Decr1, Acsl5, Lypla1, Gstt1, Gusb, Acot9, Aytl2, Soat1, Aco1
Electron transport (14) Acadl, Nqo2, Etfb, Pdia6, Gsr, Cyp51, Uqcrb, Glrx, Txnl1, Cyb5b, Sqle, Txndc4, Txnl5, Cyb5r3
3. Chromatin modification, and transcription / translation regulation
Chromatin modification/Assembly (12) Nusap1, Mad2l1, Asf1b, Tmem38b, Nek2, Cbx5, Pvt1, Hat1, Suv39h2, Cbx1, Nap1l1, Smarcad1
Transcription/Transcription regulation (33) Mdfic, Prdm1, Uhrf1, Hells, Ezh2, Tacc3, Eomes, Csda, Cenpk, Nsbp1, Klf10, Wdhd1, Sub1, Sap30, Pmf1, Myef2, Rab8b, Gtf2e2, Inppl1, Cdca7l, Tceb1, Rbl1, Tmpo, Hnrpdl, Polr3k, Cops2, Bzw1, Sin3b, Cnot7, Klf9, Mtdh, Th1l, Nfyb
RNA processing (16) Syncrip, Slbp, Hnrpll, Ell2, Thoc4, Cpsf2, Ncbp2, Snrpa1, Cstf3, Rod1, Sfrs3, Lsm5, Sfrs2, Ddx1, Sfrs1, Snrpd1
Translation (11) Farsb, Lamp2, Mrpl27, Eif4e2, Lamc1, Ap3s1, Mrpl13, Mrpl18, Eif3s1, Dnajc9, Mrpl16
4. Survival / apoptosis
Survival/Apoptosis (16) Lgals1, Birc5, Ckap2, Casp3, Gas2, Scin, Grn, Dap, Bcl7c, Api5, Casp7, Skap2, Phlda1, Bax, Nasp, Bnip2
5. Signaling
Protein phosphorylation (20) Melk, Bub1, Wee1, Ddr1, Stk39, Ryk, Plk4, Ttk, Mapk6, Chek2, Ppap2a, Cdk2, Commd1, Ptp4a2, Rps6ka1, Pigf, Ptpn9, Ppp5c, Acp1, Ptprk
Receptor/Signal transduction (24) Epas1, Rhoc, Rhoq, Hif1a, Grn, Dusp16, Rap2a, Gpr56, Akt1, Arhgap21, Tank, Gipc1, Fut8, Rrbp1, Csnk2b, Ssr2, Ranbp5, Gnb1, Nup93, Nasp, Smap1, Timm17b, Kpna3, Rab1
6. Others
Transport (Protein/Ion) (33) Sypl, Kif20a, Syt11, Arl5a, Snx10, Slc35b2, Clic4, Slc35b1, Dbi, Arl1, Lman1, Vps54, Arf4, Mtch2, Clcn5, Snx5, Vps29, Slc2a3, Trappc1, Nup62, Slc33a1, Vps45, Atp6v0a2, Golt1b, Slc4a7, Bcap29, Slc39a6, Aaas, Sfxn1, Slc12a2, Slc25a10, Sec14l1, Asna1
Cell adhesion/Communication (5) Itgb1, Adam19, Adam9, Vcl, Tnc
Microtubule-based process / cytokinesis (12) Kif2c, Kif11, Kif22, Kif4, Mid1ip1, Nde1, Kif23, Prc1, Cks2, Anln, Incenp, Dstn
Miscellaneous (89) Wisp1, Igfbp7, Chpt1, Fignl1, Trip13, Pcbp4, Tmem49, Tacstd1, Sh3bgrl, Spp1, Lxn, Capg, Smoc2, Exo1, Ltb4dh, Asns, Synpo, Gtse1, Tipin, Plagl1, Ccdc99, Mtm1, Lactb2, Gmfb, Nudt1, Wbp5, Acyp2, Errfi1, Htatip2, Ccdc80, Nucks1, Pnkd, Mpdu1, Ipp, Tmem97, Dtymk, Apaf1, Pls3, Dek, Lancl2, Pqlc3, Fyn, Phlda3, Pih1d1, Anp32e, Dsp, Tmem30a, Prdx1, Mlf2, Hccs, Actb, Tmem41b, Tex9, Rcn1, Ptprj, Nubp1, Pex7, Ywhah, Esd, Bdnf, Psmc3ip, Nab1, Pdap1, Arpc5, Ranbp1, Dck, Hnrpab, Tmem77, Pon2, Inhbb, Tyms, Nup85, Ppp1r7, Sephs2, Zdhhc6, Pdia3, Pcyt1a, Mgat2, Kdelr2, Hrb, Psmd7, Psmc1, Cox4nb, Asah1, Peci, Uck2, Nudt5, Vdac3, Tiprl