Table 6. HSC-enriched genes that are decreased in CD8+ TE.
| Gene symbol | Gene ID# | Fold Change | Gene symbol | Gene ID# | Fold Change | Gene symbol | Gene ID# | Fold Change | Gene symbol | Gene ID# | Fold Change | Gene symbol | Gene ID# | Fold Change | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TMSC/TN | TE/TN | TMSC/TN | TE/TN | TMSC/TN | TE/TN | TMSC/TN | TE/TN | TMSC/TN | TE/TN | ||||||||||
| Cell cycle | Translation | Receptor/Signal transduction | Regulation of cell growth/Proliferation | Camsap1 | 227634 | -1.75 | |||||||||||||
| Lats2 | 50523 | -1.6 | Mknk2 | 17347 | -1.62 | Aplp2 | 11804 | -1.75 | -1.5 | Ppan | 235036 | -1.6 | Las1l | 76130 | -1.76 | ||||
| Rassf2 | 215653 | -1.64 | Mrpl24 | 67707 | -1.75 | Prpf6 | 68879 | -1.5 | Creg1 | 433375 | -2.03 | Pcf11 | 74737 | -1.78 | |||||
| Flcn | 216805 | -2.1 | Eif4g2 | 13690 | -1.55 | -1.8 | Mettl3 | 56335 | -1.51 | Pctk1 | 18555 | -2.09 | Serpini1 | 20713 | -1.79 | ||||
| Sesn1 | 140742 | -2.71 | -5.69 | Rpl37a | 19981 | -2.18 | Notch1 | 18128 | -1.51 | Epc1 | 13831 | -2.03 | -2.28 | Fnbp4 | 55935 | -1.81 | |||
| DNA replication/Repair | Rpl13 | 270106 | -2.57 | Ikbkg | 16151 | -1.52 | Socs3 | 12702 | -2.41 | Ccdc53 | 67282 | -1.85 | |||||||
| Polg | 18975 | -1.55 | Rpl22 | 19934 | -2.59 | Chd8 | 67772 | -1.52 | Negative regulation of transcription | Phf1 | 21652 | -1.86 | |||||||
| E4f1 | 13560 | -1.63 | Protein phosphorylation | Rasa3 | 19414 | -1.54 | from RNA polymerase II promoter | Gtf2ird2 | 114674 | -1.87 | |||||||||
| Sfpq | 71514 | -1.54 | -1.75 | Tesk1 | 21754 | -1.59 | Mapk14 | 26416 | -1.55 | -1.54 | Cutl1 | 13047 | -1.52 | Numa1 | 101706 | -1.57 | -1.88 | ||
| Xpc | 22591 | -2.52 | Mast3 | 546071 | -1.59 | Mfng | 17305 | -1.56 | Id3 | 15903 | -1.77 | Brd1 | 223770 | -1.9 | |||||
| Nfix | 18032 | -6.12 | Prkcq | 18761 | -1.64 | Frap1 | 56717 | -1.57 | Bcl6 | 12053 | -1.85 | Plekha1 | 101476 | -1.91 | |||||
| Ubiquitin/Proteolysis/Proteasome | Jak1 | 16451 | -1.52 | -1.75 | Itpkb | 320404 | -1.81 | -1.59 | Tcf25 | 66855 | -2.02 | Frmd6 | 319710 | -1.93 | -1.98 | ||||
| Usp3 | 235441 | -1.54 | Csnk1g2 | 103236 | -1.75 | Xab2 | 67439 | -1.59 | Tle1 | 21885 | -3.63 | Akap8l | 54194 | -1.98 | |||||
| Fbxo38 | 107035 | -1.57 | Ptpn21 | 24000 | -1.68 | -1.87 | Dtx2 | 74198 | -1.77 | -1.6 | Foxp1 | 108655 | -1.67 | -4.93 | Grwd1 | 101612 | -1.99 | ||
| Ubl4 | 27643 | -1.62 | Prkce | 18754 | -1.96 | Dicer1 | 192119 | -1.77 | -1.63 | Transport (Protein/Ion) | Otud5 | 54644 | -1.99 | ||||||
| Usp9x | 22284 | -1.64 | Map4k4 | 26921 | -2.44 | Srpk2 | 20817 | -1.53 | -1.68 | Mcfd2 | 193813 | -1.52 | Etnk1 | 75320 | -2.02 | ||||
| Fbxo9 | 71538 | -1.72 | Tec | 21682 | -2.47 | Mapk8 | 26419 | -1.58 | -1.73 | Bet1l | 54399 | -1.59 | Abcf3 | 27406 | -2.03 | ||||
| Usp19 | 71472 | -1.66 | -1.85 | Ikbke | 56489 | -2.52 | Stat6 | 20852 | -1.74 | Abcb8 | 74610 | -1.61 | Acyp1 | 66204 | -2.04 | ||||
| Rnpepl1 | 108657 | -1.56 | -2.04 | Ptpn23 | 104831 | -2.87 | Ppp2r5e | 26932 | -1.76 | Acox1 | 11430 | -1.65 | Nsun4 | 72181 | -2.06 | ||||
| Ube2d2 | 56550 | -1.77 | -2.06 | Prkd2 | 101540 | -2.98 | Phc2 | 54383 | -1.78 | Ecgf1 | 72962 | -1.65 | Tmem141 | 51875 | -2.07 | ||||
| Rbbp6 | 19647 | -1.5 | -2.1 | Transcription/Transcription regulation | Rrad | 56437 | -1.84 | Pitpnm1 | 18739 | -1.76 | Snord22 | 83673 | -2.07 | ||||||
| Zfp292 | 30046 | -2.31 | Zzz3 | 108946 | -1.51 | Stub1 | 56424 | -1.84 | Acadm | 11364 | -1.82 | Lrrc8a | 241296 | -1.6 | -2.1 | ||||
| Rffl | 67338 | -2.35 | Zmynd11 | 66505 | -1.51 | Arrb1 | 109689 | -1.87 | Mybbp1a | 18432 | -1.89 | Paqr7 | 71904 | -1.68 | -2.1 | ||||
| Klk8 | 259277 | -4.21 | Zkscan6 | 52712 | -1.53 | Azi2 | 27215 | -1.74 | -1.91 | Pitpnc1 | 71795 | -1.53 | -1.97 | Cdc42se2 | 72729 | -1.56 | -2.12 | ||
| Metabolism | Nfe2l1 | 18023 | -1.53 | Rai1 | 19377 | -1.61 | -1.91 | Scamp1 | 107767 | -1.59 | -1.99 | Bola2 | 66162 | -2.16 | |||||
| Tk2 | 57813 | -1.5 | Ezh1 | 14055 | -1.55 | Mfhas1 | 52065 | -1.98 | Hcn3 | 15168 | -2.12 | Crlf3 | 54394 | -1.55 | -2.21 | ||||
| Glb1l | 74577 | -1.51 | Scmh1 | 29871 | -1.56 | Foxo3a | 56484 | -1.99 | P2rx4 | 18438 | -2.44 | Zdhhc9 | 208884 | -2.26 | |||||
| Idua | 15932 | -1.52 | Zkscan3 | 72739 | -1.6 | Spred2 | 114716 | -2.07 | Ramp3 | 56089 | -2.54 | Gas5 | 14455 | -2.3 | |||||
| Glul | 14645 | -1.54 | Zkscan1 | 74570 | -1.69 | Gaa | 14387 | -2.13 | Laptm4b | 114128 | -1.88 | -2.88 | Tmem66 | 67887 | -2.33 | ||||
| Elovl6 | 170439 | -1.55 | Rarg | 19411 | -2.56 | -1.73 | Dvl1 | 13542 | -2.15 | Kcnn4 | 16534 | -3.1 | Rbm38 | 56190 | -2.39 | ||||
| Supt6h | 20926 | -1.61 | Zfx | 22764 | -1.73 | Il16 | 16170 | -1.64 | -2.26 | Rab3ip | 216363 | -3.12 | Jarid1b | 75605 | -2.4 | ||||
| Pcyt2 | 68671 | -1.69 | Mef2d | 17261 | -1.77 | Spsb1 | 74646 | -2.26 | Slco3a1 | 108116 | -3.18 | Marveld1 | 277010 | -2.47 | |||||
| Mthfr | 17769 | -1.71 | Ncor2 | 20602 | -1.6 | -1.81 | Gbp2 | 14469 | -2.29 | Slc12a7 | 20499 | -4.35 | Ctdsp2 | 52468 | -1.94 | -2.56 | |||
| Ndufa6 | 67130 | -1.85 | Zfml | 18139 | -1.79 | -2.05 | Crebbp | 12914 | -1.64 | -2.41 | Abca1 | 11303 | -4.42 | Armcx2 | 67416 | -2.68 | |||
| Pgs1 | 74451 | -2.1 | Zfp96 | 22758 | -2.06 | Macf1 | 11426 | -1.61 | -2.57 | Ramp1 | 51801 | -1.68 | -17.13 | Ipo4 | 75751 | -2.82 | |||
| Ihpk1 | 27399 | -2.26 | Zeb1 | 21417 | -2.11 | Il4ra | 16190 | -2.8 | Miscellaneous | Rabac1 | 14470 | -3.3 | |||||||
| Cbr1 | 12408 | -2.55 | Taf1a | 21339 | -2.28 | Ltb | 16994 | -2.81 | Tnip1 | 57783 | -1.69 | -1.51 | Plekho1 | 67220 | -3.54 | ||||
| Lpin1 | 14245 | -2.57 | Bach1 | 12013 | -1.55 | -2.34 | Eng | 13805 | -3.43 | Nphp1 | 53885 | -1.52 | Peli1 | 67245 | -1.94 | -4.03 | |||
| Man2c1 | 73744 | -2.88 | Klf3 | 16599 | -2.52 | Smad4 | 17128 | -1.53 | -3.53 | Isca1 | 69046 | -1.53 | Btbd14a | 67991 | -4.63 | ||||
| Gstk1 | 76263 | -2.99 | Jmjd1a | 104263 | -2.54 | Il6st | 16195 | -1.61 | -4.31 | Msl2l1 | 77853 | -1.54 | Rreb1 | 68750 | -7.28 | ||||
| Adcy6 | 11512 | -3.08 | Basp1 | 70350 | -2.71 | -2.64 | Smad1 | 17125 | -5.01 | Nol1 | 110109 | -1.56 | Cxxc5 | 67393 | -2.79 | -7.61 | |||
| Dph5 | 69740 | -3.81 | Ash1l | 192195 | -1.83 | -2.84 | Mettl4 | 76781 | -1.58 | -5.5 | Dctn1 | 13191 | -1.56 | ||||||
| Ldhb | 16832 | -1.97 | -4.83 | Zfp1 | 22640 | -2.91 | Notch2 | 18129 | -1.58 | -5.62 | Klhl7 | 52323 | -1.62 | ||||||
| Pdk1 | 228026 | -6.29 | Zbtb20 | 56490 | -2.61 | -3.08 | Thra | 21833 | -5.8 | Sh3gl1 | 20405 | -1.63 | |||||||
| RNA processing | Dbp | 13170 | -1.96 | -3.63 | Inadl | 12695 | -6.08 | Mgea6 | 217615 | -1.65 | |||||||||
| Rpusd4 | 71989 | -1.51 | Smad7 | 17131 | -1.87 | -3.68 | Il6ra | 16194 | -18.59 | Bcl7b | 12054 | -1.66 | |||||||
| Imp3 | 102462 | -1.54 | Irf6 | 54139 | -2.29 | -4.63 | Cell adhesion/Communication | Gltscr2 | 68077 | -1.7 | |||||||||
| Mphosph10 | 67973 | -1.62 | Ssbp2 | 66970 | -6.88 | Nisch | 64652 | -1.74 | -2.16 | Serf2 | 378702 | -1.7 | |||||||
| Prpf38b | 66921 | -1.65 | Chromatin modification/Assembly | Itga6 | 16403 | -1.67 | -3.24 | Dhx30 | 72831 | -1.71 | |||||||||
| Nola3 | 66181 | -1.8 | Chd1 | 12648 | -1.59 | Cep350 | 74081 | -1.57 | -1.74 | ||||||||||
| Utp20 | 70683 | -2.32 | Smarca2 | 67155 | -2.44 | Cramp1l | 57354 | -1.78 | -1.74 | ||||||||||