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. Author manuscript; available in PMC: 2011 Jul 1.
Published in final edited form as: Gene. 2010 Mar 15;459(1-2):1–10. doi: 10.1016/j.gene.2010.03.002

Table 1.

Designation, sequence and location of various primers*

A. Primers designed from cDNAs

B. Primers designed from genomic DNA sequence

Accession # Primer name: Primer sequence Position on cDNA (Relative to A of ATG)

U16126 F1: 5′ATGAAGATTATTTTCCCGATTC3′ +1 to +22
F2: 5′TTCCAAGCCCTTTATGACAC3′ +1587 to +1606
F3: 5′GAACTAATTGATCATAAATCAAAAATC3′ +1510 to +1536
R1: 5′TTATGCCATGGTTTCTTTACC3′ +2727 to +2707
R2: 5′CTACAGAAGGACCTCTTTTCCAATTG3′ +2576 to +2551
R3: 5′GACAACACTGTAGAAATGGAA3′ +2639 to +2619
R4: 5′CTGGATGGTTATGGTGGCACT3′ +2599 to +2580
R5: 5′TCATATTCAGGCCACTGGCT3′ +1240 to +1221
R6: 5′GTGGTTCCTTGAGAATATCC3′ +98 to +78

Accession # Primer Name: Primer sequence Position on genomic DNA (relative to A of ATG)

AP002528 F4: 5′ CAAGAGGCGAGGAACCCCCGC3′ −5984 to −5964
F5: 5′ TTCTCTCGCTCTAGCTCCT3′ −5772 to −5754
F6: 5′ AAAGCCATCACCCAGAAGCAA3′ −5664 to −5644
F7: 5′ ACCAAGGCTGGGTTTCCTAC3′ −341 to −322
F8: 5′ CGAGGGCCCATTAGGCTGCA3′ −7500 to −7480
F9: 5′ ATCTTGGAGTCTGCGACCT3′ −6443 to −6425
F10: 5 AAAGCCATCACCCAGAAGCAA3′ −5984 to −5966
F11: 5′ CTTAGTCTCCCCATCCCAGGA3′ −5863 to −5842
F12: 5′ GGGAGCGAAGTCCAGCCGGAGGC3′ −5827 to −5805
F13: 5′ ATTCTCTCGCTCTAGCTCCTGTG3′ −5773 to −5751
F14: 5′ CTCCTCGGTCACCGTCTTCGCC3′ −5601 to −5580
F15: 5′ TTCCGCCCGACCTCCTCCG3′ −5518 to −5500
F16: 5′ TAAGGTGCTCGAACAGTCG3′ −1839 to −1821
F17: 5′ GAATAAACTCCTAACGAAAGCC3′ −1257 to −1236
F18: 5′ AAACTGACTTTGATTTAGCTAG3′ −710 to −688
F19: 5′ ACCAAGGCTGGGTTTCCTAC3′ −341 to −322
F20: 5′ ATGAAGATTATTTTCCCGAT3′ −1 to +20
R7: 5′TGACGGCAGCGGCGAAGTC3′ −5571 to −5589
R8: 5′AGCTAGAGCGAGAGAATTC3′ −5757 to −5775
R9: 5′ AAGACTCGCAGTGAATCCGT3′ −5253 to −5272
R10: 5′ GGTAAAGAAACTCTATCTCCT3′ −4820 to −4840
R11: 5′ AGAGCGAACCGCCTGTTTA3′ +170 to +188
*

The nucleotide A of ATG codon is designated as +1, and bases upstream of +1 in the genomic sequence are given negative numbers.