Table 5. Twelve specific degenerated primers were developed from two conserved motifs.
Primer name | Motif | Sequence (in 5′ - 3′order) |
PERO1 | FHDCFV | tsywyttccacgactgyttygt † |
PERO2 | FHDCFV | tsmgbmtsywyttccacgactg |
PERO3 | FHDCFV | ccyybvacraarcartcgtggaa |
PERO4 | VSCADI | sryngtstcvtgcgcngacat |
PERO5 | VSCADI | srbkatgtcngcrcabgagac |
PERO6 | VSCADI | srbkatgtcngcrcabgasac |
PERO7 | FHDCFV | tsmgbmtsywyttccaygaytg |
PERO8 | FHDCFV | tsywyttccacgaytgyttcgt |
PERO9 | FHDCFV | ttccacgaytgyttygtbvrrgg |
PERO10 | FHDCFV | ttccacgactgyttygtbvrggg |
PERO11 | FHDCFV | ccyybvacraarcartcgtgg |
PERO12 | VSCADI | sryngtstcvtgygcngacat |
†Ambiguous DNA characters are represented using the standard notation recommended by the International Union of Biochemistry.