Table. 3.
Molecular features of the genes and their deduced protein products for the four strains of APMV-2:
| Gene | Strain | mRNA features (nt) | Intergenic sequence (nt) |
Deduced protein (aa) |
||||
|---|---|---|---|---|---|---|---|---|
| Gene-start | 5′ UTR | ORF | 3′ UTR | Gene-end | ||||
| N | Yucaipa | GGGGGCGACA | 75 | 1374 | 77 | TTAAGAAAAAA | 7 | 457 |
| Bangor | GGGGGCGACA | 75 | 1374 | 77 | TTAAGAAAAAA | 7 | 457 | |
| England | GGGGGCGACA | 75 | 1374 | 77 | TTAAGAAAAAA | 7 | 457 | |
| Kenya | GGGGGCGACA | 75 | 1374 | 77 | TTAAGAAAAAA | 7 | 457 | |
| P | Yucaipa | GGGGGCGAAG | 61 | 1200 | 97 | TTAACAAAAAA | 7 | 399 |
| Bangor | GGGGGCGAAT | 61 | 1200 | 97 | TAAGAAAAAAA | 7 | 399 | |
| England | GGGGGCGAAG | 61 | 1200 | 97 | TTAACAAAAAA | 7 | 399 | |
| Kenya | GGGGGCGAAG | 61 | 1200 | 97 | TTAACAAAAAA | 7 | 399 | |
| P/V | Yucaipa | GGGGGCGAAG | 61 | 699 | 599 | TTAACAAAAAA | - | 232 |
| Bangor | GGGGGCGAAT | 61 | 699 | 599 | TAAGAAAAAAA | - | 232 | |
| England | GGGGGCGAAG | 61 | 699 | 599 | TTAACAAAAAA | - | 232 | |
| Kenya | GGGGGCGAAG | 61 | 699 | 599 | TTAACAAAAAA | - | 232 | |
| P/W | Yucaipa | GGGGGCGAAG | 61 | 624 | 675 | TTAACAAAAAA | - | 207 |
| Bangor | GGGGGCGAAT | 61 | 462 | 837 | TAAGAAAAAAA | - | 153 | |
| England | GGGGGCGAAG | 61 | 624 | 675 | TTAACAAAAAA | - | 207 | |
| Kenya | GGGGGCGAAG | 61 | 624 | 675 | TTAACAAAAAA | - | 207 | |
| M | Yucaipa | GGGGGCGAAG | 32 | 1110 | 117 | TTAAGAAAAAA | 23 | 369 |
| Bangor | GGGGGCGAAT | 38 | 1110 | 135 | TTTAGAAAAAA | 23 | 369 | |
| England | GGGGGCGAAG | 32 | 1110 | 117 | TTAAGAAAAAA | 23 | 369 | |
| Kenya | GGGGGCGAAG | 32 | 1110 | 117 | TTAAGAAAAAA | 23 | 369 | |
| F | Yucaipa | GGGGGCGACA | 44 | 1611 | 31 | TTAAGAAAAAA | 9 | 536 |
| Bangor | GGGGGCGAAA | 20 | 1635 | 84 | TTAAGAAAAAA | 4 | 544 | |
| England | GGGGGCGACA | 44 | 1611 | 31 | TTAAGAAAAAA | 9 | 536 | |
| Kenya | GGGGGCGACA | 44 | 1611 | 31 | TTAAGAAAAAA | 9 | 536 | |
| HN | Yucaipa | GGGGGCGACA | 66 | 1743 | 69 | TTAAGAAAAAA | 3 | 580 |
| Bangor | GGGGGCGAAA | 60 | 1752 | 61 | TTAATAAAAAA | 8 | 583 | |
| England | GGGGGCGACA | 66 | 1743 | 69 | TTAAGAAAAAA | 3 | 580 | |
| Kenya | GGGGGCGACA | 72 | 1749 | 64 | TTAATAAAAAA | 8 | 582 | |
| L | Yucaipa | GGGGGCGAAT | 11 | 6729 | 73 | TTAAGAAAAAA | - | 2242 |
| Bangor | GGGGGCGAAT | 11 | 6729 | 102 | TTAAGAAAAAA | - | 2242 | |
| England | GGGGGCGAAT | 11 | 6729 | 73 | TTAAGAAAAAA | - | 2242 | |
| Kenya | GGGGGCGAAT | 11 | 6729 | 73 | TTAAGAAAAAA | - | 2242 | |
Differences relative to the most conserved sequence are underlined.