TABLE 3.
Genes regulated by AphB under AKI conditions, as determined by microarray analysis
| Gene (locus tag) | Bayes P | Folda | Gene product (gene name)b |
|---|---|---|---|
| VC0278 | 9.2E−07 | −6.18 | Transcriptional activator (cadC) |
| VC0280 | 1.7E−10 | −6.05 | Cadaverine/lysine antiporter (cadB) |
| VC0281 | 1.2E−06 | −4.95 | Lysine decarboxylase (cadA) |
| VC0364 | 3.1E−05 | 3.50 | Bactoferritin-associated ferredoxin (bfd) |
| VC0770 | 6.3E−06 | −8.34 | Gpr1/Fun34/YaaH family protein |
| VC1777 | 2.9E−04 | −2.58 | Conserved hypothetical protein |
| VC1780 | 7.5E−04 | −2.62 | Conserved hypothetical protein |
| VC1781 | 9.1E−05 | −2.81 | Conserved hypothetical protein |
| VC1901 | 4.6E−05 | −2.57 | Na+/H+ antiporter (nhaB) |
| VC2100 | 3.2E−04 | −2.60 | Conserved hypothetical protein |
| VC2102 | 2.1E−04 | −2.64 | Conserved hypothetical protein |
| VC2772 | 1.1E−06 | −3.89 | ParB family protein |
| VCA0013 | 3.7E−04 | −2.60 | Maltodextrin phosphorylase (malP) |
| VCA0186 | 1.7E−15 | 7.56 | Hypothetical protein |
| VCA0188 | 9.0E−05 | 2.93 | Hypothetical protein |
| VCA0274 | 8.7E−07 | −6.41 | Carbonic anhydrase (cah) |
| VCA0526 | 4.6E−06 | −5.86 | ClC-type chloride channel |
| VCA0834 | 4.3E−06 | −3.41 | Hypothetical protein |
| VCA0944 | 1.9E−04 | −3.58 | Maltose ABC transporter, permease protein (malF) |
| VCA1027 | 8.1−04 | −2.89 | Maltose operon periplasmic protein, putative |
| VCA1099 | 9.6−04 | −2.72 | ABC transporter, permease protein |
a
Positive numbers show repression and negative numbers show activation.
b
Boldface type indicates genes directly activated by AphB, as determined by gel mobility shift analysis.