Table 1. Mammalian-type amino acids in the PB2 protein of ostrich isolates.
Virusa | No. of clones | PB2 amino acidb at position: | ||
591 | 627 | 701 | ||
Inoculum | 50/50 | Q | E | D |
Brain isolate | 35/35 | Q | K | D |
Trachea isolate | 61/73 | Q | K | D |
12/73 | K | E | D | |
Lung isolate | 33/57 | Q | E | D |
24/57 | Q | K | D |
We intratracheally inoculated A/duck/Vietnam/5001/04 (H5N1) into a 3-week-old ostrich and isolated virus from trachea, lungs, and brain on day 3 post-infection (for more details, see [10]). Viral RNA was isolated, and the PB2 gene was amplified by RT-PCR and cloned. We then sequenced the indicated numbers of PB2 clones. Results for PB2-627 and PB2-701 were already shown in Shinya et al. [10]. We here expanded our analysis to include PB2-591 in this study.
Mammalian-type amino acids are shown in bold and italics.