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. 2010 Aug 5;6(8):e1000868. doi: 10.1371/journal.pcbi.1000868

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Mithani et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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The pseudo-likelihood of going from the network to the network (Figure 1) was calculated conditioned on for different sub-network sizes. The times taken for calculating the pseudo-likelihood averaged across three runs are shown in red. The horizontal lines show the average CPU time taken using the MCMC approach based on path sampling described in Mithani et al. [9] with 11,000 iterations including first 1,000 iteration as burn-in period (blue dashed line) and by exponentiating the full network (brown dotted line).

Inline graphic — The pseudo-likelihood of going from the network to the network (Figure 1) was calculated conditioned on for different sub-network sizes. The times taken for calculating the pseudo-likelihood averaged across three runs are shown in red. The horizontal lines show the average CPU time taken using the MCMC approach based on path sampling described in Mithani et al. [9] with 11,000 iterations including first 1,000 iteration as burn-in period (blue dashed line) and by exponentiating the full network (brown dotted line).