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. Author manuscript; available in PMC: 2010 Aug 7.
Published in final edited form as: Nat Methods. 2008 Sep;5(9):829–834. doi: 10.1038/nmeth.1246

Table 1.

ChIP-Seq data and analysis summary.

GABP SRF NRSF
polycl.		 NRSF
monocl.
Number of aligned ChIP reads 7862231 8721730 8813398 5358147
Number of peaks called by QuEST 6442 2429 2960 2596
FDR estimate 1/6442 1/2429 <1/2960 1/2595
% peaks near genes (<2Kb or internal) 83% 72% 53% 53%