Table 5. Tm-values and thermodynamic data of non self-complementary ps duplexes of the sequence 5′-d(ATiCiCAXTTATXA)·5′-d(TAGGTYAATACT)a,b.
X·Y | Tm (°C) | ΔTm/mod (°C) | X·Y | Tm (°C) | ΔTm/mod (°C) | X·Y | Tm (°C) | ΔTm/mod (°C) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
iG·Cc | 28·29 | 39 | |||||||||
4·C | 30·29 | 39 | ±0 | 5·C | 35·29 | 43 | +4 | 6·C | 36·29 | 44 | +5 |
4·G | 30·31 | – | >–20 | 5·G | 35·31 | – | >–20 | 6·G | 36·31 | – | >–20 |
4·T | 30·32 | 27 | –12 | 5·T | 35·32 | 29 | –10 | 6·T | 36·32 | 31 | –7 |
4·A | 30·33 | 28 | –11 | 5·A | 35·33 | 28 | –11 | 6·A | 36·33 | 28 | –11 |
4·iC | 30·34 | 26 | –13 | 5·iC | 35·34 | 35 | –4 | 6·iC | 36·34 | 36 | –3 |
aIn 1 M NaCl, 0.1 M MgCl2, 60 mM sodium cacodylate, pH 7; oligonucleotide concentration: 5 µM (single strand).
bd(iC) = MeiCd = 5-Methyl-2′-deoxyisocytidine.
cSee Seela and Wei (22).