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. 2003 Dec 15;31(24):7150–7158. doi: 10.1093/nar/gkg926

Table 6. Tm-values and thermodynamic data of non self-complementary ps duplexes of the sequence 5′-d(TiCATAAiCTXXAT)·5′-d(AGTATTGAYCTA)a,b.

X·Y   Tm (°C) ΔTm/mod (°C) X·Y   Tm (°C) ΔTm/mod (°C) X·Y   Tm (°C) ΔTm/mod (°C)
iG·Cc 23·24 44                  
4·G 25·35 32 –12 5·G 26·35 38 –6 6·G 27·35 39 –5
4·T 25·36 29 –15 5·T 26·36 34 –10 6·T 27·36 34 –10
4·A 25·37 30 –14 5·A 26·37 33 –11 6·A 27·37 32 –12
4·iC 25·38 40 –4 5·iC 26·38 45 +1 6·iC 27·38 46 +2

aIn 1 M NaCl, 0.1 M MgCl2, 60 mM sodium cacodylate, pH 7; oligonucleotide concentration: 5 µM (single strand).

bd(iC) = MeiCd = 5-Methyl-2′-deoxyisocytidine.

cSee Seela and Wei (22).