Table 6. Tm-values and thermodynamic data of non self-complementary ps duplexes of the sequence 5′-d(TiCATAAiCTXXAT)·5′-d(AGTATTGAYCTA)a,b.
X·Y | Tm (°C) | ΔTm/mod (°C) | X·Y | Tm (°C) | ΔTm/mod (°C) | X·Y | Tm (°C) | ΔTm/mod (°C) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
iG·Cc | 23·24 | 44 | |||||||||
4·G | 25·35 | 32 | –12 | 5·G | 26·35 | 38 | –6 | 6·G | 27·35 | 39 | –5 |
4·T | 25·36 | 29 | –15 | 5·T | 26·36 | 34 | –10 | 6·T | 27·36 | 34 | –10 |
4·A | 25·37 | 30 | –14 | 5·A | 26·37 | 33 | –11 | 6·A | 27·37 | 32 | –12 |
4·iC | 25·38 | 40 | –4 | 5·iC | 26·38 | 45 | +1 | 6·iC | 27·38 | 46 | +2 |
aIn 1 M NaCl, 0.1 M MgCl2, 60 mM sodium cacodylate, pH 7; oligonucleotide concentration: 5 µM (single strand).
bd(iC) = MeiCd = 5-Methyl-2′-deoxyisocytidine.
cSee Seela and Wei (22).