Table 8. Tm-values and thermodynamic data of non self-complementary aps duplexes of the sequence 5′-d(TAGGTXAATACT)·3′-d(ATCCAYTTATGA)a,b.
X·Y | Tm (°C) | ΔTm/mod (°C) | X·Y | Tm (°C) | ΔTm/mod (°C) | X·Y | Tm (°C) | ΔTm/mod (°C) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
iC·iGc | 34·39 | 54 | |||||||||
iC·4 | 34·40 | 56 | +2 | iC·5 | 34·41 | 57 | +3 | iC·6 | 34·42 | 58 | +4 |
C·4 | 29·40 | 42 | –12 | C·5 | 29·41 | 47 | –7 | C·6 | 29·42 | 48 | –6 |
G·4 | 31·40 | 42 | –12 | G·5 | 31·41 | 47 | –7 | G·6 | 31·42 | 47 | –7 |
T·4 | 32·40 | 41 | –13 | T·5 | 32·41 | 42 | –12 | T·6 | 32·42 | 42 | –12 |
A·4 | 33·40 | 28 | –26 | A·5 | 33·41 | 27 | –27 | A·6 | 33·42 | 28 | –26 |
aIn 1 M NaCl, 0.1 M MgCl2, 60 mM sodium cacodylate, pH 7; oligonucleotide concentration: 5 µM (single strand).
bd(iC) = MeiCd = 5-Methyl-2′-deoxyisocytidine.
cSee Seela and Wei (22).