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. 2003 Dec 15;31(24):7150–7158. doi: 10.1093/nar/gkg926

Table 8. Tm-values and thermodynamic data of non self-complementary aps duplexes of the sequence 5′-d(TAGGTXAATACT)·3′-d(ATCCAYTTATGA)a,b.

X·Y   Tm (°C) ΔTm/mod (°C) X·Y   Tm (°C) ΔTm/mod (°C) X·Y   Tm (°C) ΔTm/mod (°C)
iC·iGc 34·39 54                  
iC·4 34·40 56 +2 iC·5 34·41 57 +3 iC·6 34·42 58 +4
4 29·40 42 –12 5 29·41 47 –7 6 29·42 48 –6
4 31·40 42 –12 5 31·41 47 –7 6 31·42 47 –7
4 32·40 41 –13 5 32·41 42 –12 6 32·42 42 –12
4 33·40 28 –26 5 33·41 27 –27 6 33·42 28 –26

aIn 1 M NaCl, 0.1 M MgCl2, 60 mM sodium cacodylate, pH 7; oligonucleotide concentration: 5 µM (single strand).

bd(iC) = MeiCd = 5-Methyl-2′-deoxyisocytidine.

cSee Seela and Wei (22).