TABLE 1.
Probe | Gene | Organism | Positive association(s) (location[s]) | Negative association(s) (location[s]) |
---|---|---|---|---|
Identical | ||||
13925 | Chaperone protein DnaK | Spirosoma linguale DSM 74 | ER (WC, SSR), SN (SSR) | GM (SSR) |
19493 | Acyl-CoA dehydrogenase | Alcanivorax sp. strain DG881 | —a | ER (WC, SSR), GM (SSR) |
10047 | Conserved hypothetical protein | Arthrospira maxima CS-328 | SL (WC, SSR) | —a |
Similar | ||||
WC | ||||
14393 | TonB-dependant receptor | Chitinophaga pinensis DSM 2588 | SL | GM |
605 | RNA polymerase | Chitinophaga pinensis DSM 2588 | — | GM |
19439 | TonB-dependent receptor | Chitinophaga pinensis DSM 2588 | — | GM |
SSR | ||||
9611 | 3-Isopropylmalate dehydratase | Chitinophaga pinensis DSM 2588 | SN | ER |
35 | protein of unknown function | Chitinophaga pinensis DSM 2588 | GM | SN |
13463 | DEAD/DEAH box helicase | Chitinophaga pinensis DSM 2588 | — | SN |
WC | ||||
12659 | DEAD/DEAH box helicase | Desulfovibrio salexigens DSM 2638 | ER | — |
SSR | ||||
13463 | DEAD/DEAH box helicase | Chitinophaga pinensis DSM 2588 | — | SN |
WC | ||||
4917 | RecA protein | Prevotella veroralis F0319 | — | ER |
SSR | ||||
6609 | RecD/TraA family helicase | Methylobacterium sp. strain 4-46 | SN | ER, GM, SL |
—, no association.