Table 2. Chromatin regulators are enriched in bam testis compared to wt testis.

The chromatin remodeling factors were retrieved from http://web.wi.mit.edu/young/pub/chromatin_remodeling.html; the histone modifying enzymes were from ⁹⁹–¹⁰⁷ (All chromatin remodeling factors and histone modifying enzymes listed here are supported by published research papers.). For each chromatin regulator, the fold change in bam/wt gonads is listed, as well as the RPKM values in bam and wt gonads, respectively. Red numbers indicate enrichment in bam gonads, and blue numbers indicate enrichment in wt gonads. Most of the chromatin regulators have high expression in bam testis (RPKM> 10), therefore the down-regulation in wt testis is significant.

Gene Name	bam/wt testis	bam testis (RPKM)	wt testis (RPKM)	Gene Name	bam/wt testis	bam testis (RPKM)	wt testis (RPKM)	Gene Name	bam/wt testis	bam testis (RPKM)	wt testis (RPKM)	Gene Name	bam/wt ovary	bam ovary (RPKM)	wt ovary (RPKM)
Rpd3	15.35	158.02	10.29	CG11033	4.70	43.67	9.30	trr	3.05	26.58	8.72	tna	2.81	48.70	17.31
ph-p	13.46	17.27	1.28	Suv4-20	4.56	78.75	17.25	mof	2.90	34.20	11.80	Iswi	2.29	122.00	53.20
Art4	11.92	43.10	3.62	kis	4.45	120.73	27.16	tlk	2.89	80.46	27.86	SuUR	0.29	8.37	28.63
CG3654	8.45	48.74	5.77	Mi-2	4.30	138.92	32.32	Snr1	2.82	59.58	21.12	Art4	0.36	26.46	73.45
tara	8.38	17.31	2.07	osa	4.20	174.52	41.54	Su(var)3-9	2.74	85.46	31.20	Ada2b	0.37	28.12	75.50
mod	8.24	127.82	15.52	CG13902	4.19	22.48	5.36	Su(var)2-HP2	2.58	37.82	14.65	Sgf11	0.48	14.46	30.38
egg	6.77	76.40	11.29	ial	4.11	56.06	13.62	CG2982	2.52	72.24	28.65	borr	0.48	28.40	59.37
MED21	6.53	14.72	2.25	E(z)	4.06	51.80	12.75	wda	2.48	18.39	7.42	z	0.50	22.94	46.21
Psc	6.31	15.90	2.52	not	4.02	66.83	16.62	Hcf	2.32	43.82	18.91	Scm	0.49	23.64	48.50
Rpb4	6.19	20.81	3.36	Bre1	3.96	52.01	13.13	Su(var)3-3	2.27	28.13	12.39	Set2	0.50	29.84	60.13
BAP60	6.12	69.93	11.43	CG12879	3.90	15.40	3.95	Sce	2.17	47.07	21.73
esc	6.03	51.57	8.55	CG8165	3.87	10.56	2.73	Invadolysin	2.14	50.45	23.56
BAP55	5.77	87.57	15.17	phol	3.77	68.00	18.03	Su(var)205	2.14	101.00	47.23
lid	5.56	149.49	26.87	pr-set7	3.52	44.45	12.64	Taf1	2.05	46.89	22.86
Hdac3	5.56	68.80	12.38	Nurf-38	3.39	191.34	56.43	ash1	0.49	18.95	38.48
Art1	5.53	140.78	25.47	Sir2	3.37	39.03	11.58	Mst35Ba	0.49	0.00	84.60
mor	5.39	103.02	19.12	trx	3.28	29.73	9.07	Kdm4B	0.49	54.43	111.24
Dp1	5.37	157.07	29.24	Pc	3.28	12.13	3.70	tna	0.21	42.48	205.15
Elp3	5.30	57.39	10.83	Nurf55	3.21	123.73	38.50	Mst35Bb	0.01	0.00	135.32
Acf1	4.97	55.55	11.17	HDAC4	3.16	31.95	10.12	CG31281	0.00	0.00	282.35
Pcaf	4.86	50.72	10.44	Su(z)12	3.10	75.43	24.30