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The numbers of detected junctions and the EST validation rates for various neighborhood sizes used for nUP/nDOWN filtering right after the standard paired-end SpliceMap
| K = 40 | K = 80 | K = 160 | |
|---|---|---|---|
| Total junctions | 156 015 | 162 060 | 165 452 |
| Novel junctions | 25 441 | 27 497 | 29 342 |
| Junctions with EST validation | 135 586 | 139 880 | 141 758 |
| Novel junctions with EST | 9901 | 10 562 | 11 062 |
| EST validation rate | 86.91% | 86.31% | 85.68% |
| EST validation rate (novel) | 38.92% | 38.41% | 37.70% |
