Table 4.
The statistics of the results by TopHat and SpliceMap after nUM and nUP/nDOWN (K = 40) filterings
| SpliceMap | TopHat | |
|---|---|---|
| Total junctions | 151 317 | 133 722 |
| Novel junctionsa | 23 020 | 19 777 |
| Junctions with EST validationb | 133 010 (87.90%) | 117 113 (87.58%) |
| Junctions with nNR > 1 (multiple non-redundant reads) | 119 298 | – |
| Novel junctions with EST | 9493 (41.24%) | 7273 (36.78%) |
| Novel junctions with nNR > 1 | 7187 | – |
| Junctions with EST and with nNR > 1 | 112 962 | – |
| Novel junctions with EST and with nNR > 1 | 4242 | – |
aNovel junctions are the ones that are not in RefSeq, Ensembl and KnownGene.
bThe percentage in the parentheses is the EST validation rate.