Table 1.

Average change of 3′/5′ ratios in all mutants and conditions tested

Query condition/mutant	Control	Query log2 (3′/5′ ratio) average	Control log2 (3′/5′ ratio) average	Difference (mutant-control)	Student’s t-test P-value	Number of genes analysed
BY4741-SC	BY4741-YPD	−0.29	−0.42	0.13	1.56 × 10−1	50
W303-SC	W303-YPD	−0.01	0.09	−0.11	2.13 × 10−2	43
BY4741-YPD + NaCl 0.5M	BY4741-YPD	−0.41	−0.29	−0.12	2.03 × 10−1	54
W303-YPD	BY4741-YPD	0.15	−0.33	0.48	2.39 × 10−6	46
W303-SC	BY4741-SC	−0.06	−0.34	0.28	5.25 × 10−5	47
bre1Δ	BY4741	−0.55	−0.23	−0.32	7.93 × 10−3	55
bur2Δ	BY4741	−0.01	−0.34	0.33	3.00 × 10−3	49
ccr4Δ	BY4741	0.22	−0.43	0.65	3.70 × 10−4	36
cdc73Δ	BY4741	−0.39	−0.23	−0.16	1.50 × 10−1	52
dst1Δ	BY4741	−0.52	−0.31	−0.21	8.61 × 10−3	45
fes1Δ	BY4741	−0.84	−0.47	−0.37	4.17 × 10−3	38
fun12Δ	BY4741	−0.07	−0.40	0.32	5.02 × 10−3	50
med2Δ	BY4741	−0.85	−0.38	−0.47	3.17 × 10−4	38
not5Δ	BY4741	−0.29	−0.43	0.14	3.97 × 10−1	25
rpb4Δ	BY4741	−0.62	−0.35	−0.27	1.53 × 10−2	54
rpb9Δ	BY4741	0.76	−0.27	1.03	1.68 × 10−12	47
rtf1Δ	BY4741	−0.59	−0.34	−0.25	6.47 × 10−2	27
set1Δ	SET1-myc (W303)	0.14	0.19	−0.05	6.80 × 10−1	48
set1-AA-myc	SET1-myc (W303)	−0.19	0.21	−0.40	1.15 × 10−4	42
spt4Δ	BY4741	−0.59	−0.28	−0.31	8.38 × 10−4	50
spt7Δ	BY4741	−0.33	−0.48	0.15	2.97 × 10−1	37
spt20Δ	BY4741	−0.05	−0.21	0.16	2.72 × 10−1	32
ssd1Δ(BY4741)	BY4741	0.11	−0.28	0.39	6.30 × 10−3	57
ssd1Δ(BY4741)	ssd1-d (W303)	0.09	0.15	−0.06	6.87 × 10−1	47
377 array:
rpb9Δ (377 array)	BY4741 (377 array)	0.91	0.25	0.66	5.14 × 10−31	261
rpb9ΔChIP	BY4741 ChIP	0.08	0.19	−0.11	4.92 × 10−5	324
BY4741 run on	BY4741 ChIP	0.29	0.12	0.17	5.46 × 10−2	250
rpb9Δrun on	rpb9ΔChIP	0.93	0.03	−0.90	2.93 × 10−19	250