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. Author manuscript; available in PMC: 2011 Jun 1.
Published in final edited form as: J Neurochem. 2010 Apr 6;113(6):1685–1691. doi: 10.1111/j.1471-4159.2010.06735.x

Table 1. miRNAs altered temporally after preconditioning.

miRNA 6h 24h 72h # of targets
Up-regulated
mir-374 9.48 3.51 2.76 260
mir-98 6.98 2.95 2.91 280
mir-340 -5p 6.01 2.00 1.67 419
mir-21 5.79 13.03 5.71 195
let-7a 4.01 1.83 NC 367
mir-352 3.77 1.65 2.58 133
mir-379* 3.47 1.84 1.70 --
mir-335 3.35 1.79 1.61 332
mir-181b 2.63 1.51 1.62 396
mir-26b 2.18 1.53 1.76 231
mir-181d 2.06 2.22 NC 420
mir-15b 1.56 2.18 4.07 513
mir-146a 1.96 1.57 2.70 287

Down-regulated
mir-466c 20.05 27.18 20.38 209
mir-292 -5p 12.37 7.11 7.24 235
mir-328 7.41 1.58 1.87 271
mir-873 7.21 8.94 9.64 328
mir-494 5.31 2.63 4.40 340
let-7d* 4.77 1.65 4.42 --
mir-345 -5p 4.41 2.04 2.01 138
mir-92b 4.06 2.13 NC 187
mir-30c-2* 3.83 2.02 3.01 --
mir-322* 1.84 2.15 2.52 --

The values are mean fold increases or decreases in the PC groups over sham group obtained from 36 cross-comparisons (n = 6 for each group) in each case. The SD was <15% in all cases. Only the fold changes that are statistically significantly different from sham (by ANOVA) were given. NC, no change compared to sham. The # of targets for each miRNA was predicted using the web tool microRNA.org. The miRNAs are transcribed as long pri-miRNAs (primirs) with several stem loop structures. The RNAse Drosha cuts a primir to release the ~70 nt stem loop structures called pre-miRNAs (premirs). Another RNAse Dicer releases a mature miRNA (~22 nt long) from a premir. In some cases, a second miRNA can be formed from the other arm of a premir. The two miRNAs formed from the same premir are usually given the same number, but the minor one will be denoted with a star. The limitation of the et prediction algorithms like microRNA.org is that they can not predict the targets of miRNAs with stars.

*

Hence, the miRNAs with a were not used in the pathways analysis.