Table 1.
Recovery of known TFBSs and motifs in each step of the eGLECLUBS algorithm for E. coli K12 and B. subtilis
| Genomes | Motifs/TFBSs | RegulonDB/DBTBS | COORs | Phylogenetic footprinting | Clustering* |
|---|---|---|---|---|---|
| E. coli K12 | TFBSs | 1642 | 1447 (88%) | 1347 (93%) | 1102(82%) |
| Motifs | 125 | 123 (98%) | 122 (99%) | 113 (93%) | |
| B. subtilis | TFBSs | 568 | 451 (79%) | 397 (88%) | 324(82%) |
| Motifs | 99 | 93 (94%) | 92 (99%) | 88 (96%) | |
The percentage in a brace is the recovery rate at that step based on the previous step. *The calculations are based on the top 300 and 230 motifs/clusters predicted in E. coli K12 and B. subtilis, respectively.