Table 3.
SplicePredictor analysis of splice donor and acceptor sites within Ac detected by RT–PCR in sugar beet
| Splice donor sites |
Z. mays
* (P*ρ*γ*) |
A. thaliana
* (P*ρ*γ*) |
||
|---|---|---|---|---|
| Position | Intron | Sequence | ||
| 1112 | Intron 1 | aagGTatat | 13 (5 5 3) | 13 (5 3 5) |
| 1584 | Alternative | cagGTatgg | 15 (5 5 5) | 7 (2 2 3) |
| 2567 | Intron 2 | cagGTatgt | 15 (5 5 5) | 13 (5 3 5) |
| 2736 | Alternative | ctgGTactc | 7 (3 3 1) | 8 (4 3 1) |
| 3435 | Intron 3 | aagGTgaat | 15 (5 5 5) | 13 (5 4 4) |
| 3616 | Intron 4 | gagGTattt | 15 (5 5 5) | 13 (5 3 5) |
| 3885 | Alternative | cgtGTtagt | 12 (5 5 2) | 9 (5 3 1) |
| 3915 | Alternative | tatGTattt | 11 (5 5 1) | 8 (5 2 1) |
| Splice acceptor sites |
Z. mays
* (P*ρ*γ*) |
A. thaliana
* (P*ρ*γ*) |
||
|---|---|---|---|---|
| Position | Intron | Sequence | ||
| 1218 | Intron 1 | atctgtttataacAGgg | 15 (5 5 5) | 13 (4 5 4) |
| 2327 | Alternative | aacttggttgcaaAGga | 15 (5 5 5) | 9 (3 3 3) |
| 2349 | Alternative | tggctgtaattgcAGga | n.d.a | 4 (1 2 1) |
| 2637 | Intron 2 | tgtcaattattgtAGgt | 15 (5 5 5) | 13 (5 3 5) |
| 3240 | Alternative | tttatcatggtggAGgg | 6 (2 3 1) | 3 (1 1 1) |
| 3246 | Alternative | atggtggaggggaAGgg | 3 (1 1 1) | 3 (1 1 1) |
| 3254 | Alternative | ggggaagggttgcAGaa | 3 (1 1 1) | 4 (1 1 2) |
| 3523 | Intron 3 | tttgtgtcattcaAGgt | 11 (5 5 1) | 15 (5 5 5) |
| 3735 | Alternative | cgccttgctgcccAGcc | 5 (1 1 3) | 5 (1 1 3) |
| 4002 | Intron 4 | tttgtgtattaacAGga | 15 (5 5 5) | 13 (5 3 5) |
anot detected