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. Author manuscript; available in PMC: 2011 Aug 1.
Published in final edited form as: Biochemistry. 2010 Aug 3;49(30):6341–6351. doi: 10.1021/bi100660r

Table 3.

Apparent dissociation constants Kd (µM) for the binding of KA-AMC to various RNA constructsa.

SL1-fl ED SL1-s ED SL1-yf KD SL1-yb KD SL2 SL3
22.6 47.6 22.9 26.3 47.5 65.1
(2.5) (2.1) (1.1) (1.9) (2.4) (0.4)
a

Apparent dissociations constants were determined based on fluorescence quenching of small molecules upon RNA titration as explained in Materials and Methods. Standard deviations are shown in parentheses, determined in 2–4 independent experiments.