Table 4.
Mating system partition 1 | Mating system partition 2 | Mating system partition 3 | Group Size | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Class | Gene | UM1 branches |
MM2 branches |
UM1 branches |
MM2 branches |
UM1 branches |
MM2 branches |
SG3 branches |
LG4 branches |
||||||||
ω5>1 | Total | ω5>1 | Total | ω5>1 | Total | ω5>1 | Total | ω5>1 | Total | ω5>1 | Total | ω5>1 | Total | ω5>1 | Total | ||
Non– pathogen- interacting genes |
ANG | 3 | 6 | 2 | 5 | 3 | 5 | 2 | 6 | 2 | 5 | 2 | 5 | 0 | 3 | 3 | 5 |
CCR5 | 2 | 15 | 0 | 10 | 2 | 13 | 0 | 12 | 2 | 13 | 0 | 10 | 1 | 7 | 1 | 10 | |
CD4 | 1 | 4 | 3 | 7 | 0 | 3 | 4 | 8 | 0 | 3 | 3 | 7 | 0 | 2 | 3 | 6 | |
CD45 | 5 | 6 | 2 | 2 | 5 | 6 | 2 | 2 | 5 | 6 | 2 | 2 | 4 | 4 | 1 | 1 | |
DUFFY | 0 | 10 | 0 | 9 | 0 | 9 | 0 | 10 | 0 | 9 | 0 | 9 | 0 | 5 | 0 | 6 | |
Pathogen- interacting genes |
APOBEC3G | 3 | 7 | 5 | 6 | 1 | 5 | 7 | 8 | 1 | 5 | 5 | 6 | 2 | 4 | 5 | 6 |
APOBEC3H | 2 | 4 | 4 | 8 | 1 | 3 | 5 | 9 | 1 | 3 | 4 | 8 | 2 | 3 | 2 | 6 | |
CAMP | 4 | 7 | 2 | 4 | 4 | 5 | 2 | 6 | 4 | 5 | 2 | 4 | 2 | 4 | 1 | 3 | |
PKR | 3 | 9 | 4 | 8 | 3 | 7 | 4 | 10 | 3 | 7 | 4 | 8 | 1 | 5 | 4 | 8 | |
TLR1 | 0 | 7 | 1 | 4 | 0 | 4 | 1 | 7 | 0 | 4 | 1 | 4 | 0 | 4 | 1 | 3 | |
TLR4 | 2 | 9 | 4 | 9 | 1 | 7 | 5 | 11 | 1 | 7 | 4 | 9 | 2 | 4 | 2 | 6 | |
TLR5 | 0 | 11 | 1 | 8 | 0 | 9 | 1 | 10 | 0 | 9 | 1 | 8 | 0 | 5 | 0 | 7 | |
TRIM5 | 5 | 10 | 6 | 8 | 4 | 7 | 7 | 11 | 4 | 7 | 6 | 8 | 5 | 7 | 3 | 6 | |
TRIM22 | 0 | 11 | 1 | 9 | 0 | 6 | 1 | 14 | 0 | 5 | 1 | 9 | 0 | 7 | 1 | 9 | |
ZAP | 1 | 7 | 2 | 5 | 1 | 4 | 2 | 8 | 1 | 4 | 2 | 5 | 2 | 4 | 1 | 5 | |
ALL GENES | 31 | 123 | 37 | 102 | 25 | 93 | 43 | 132 | 24 | 92 | 37 | 102 | 21 | 68 | 28 | 87 | |
P-value6 | P=0.05* | n.s. | P=0.09# | n.s. | |||||||||||||
PATHOGEN INTERACTING |
20 | 82 | 30 | 69 | 15 | 57 | 35 | 94 | 15 | 56 | 30 | 69 | 16 | 47 | 20 | 59 | |
P-value6 | P=0.01* | P=0.12 | P=0.04* | n.s. | |||||||||||||
Non PATHOGEN INTERACTING |
11 | 41 | 7 | 33 | 10 | 36 | 8 | 38 | 9 | 36 | 7 | 33 | 5 | 21 | 8 | 2 | |
P-value6 | n.s | n.s | n.s | n.s. |
P<0.05,
P<0.1.
Unimale.
Multimale.
Below one standard deviation around the mean log group size.
Above one standard deviation around the mean log group size.
ω=dN/dS.
one-tailed Z-test of the difference between the proportions of branches with dN/dS>1 between UM and MM classes or (SG and LG), across the 15 genes.