Table 1.
Description of predominant shared-types (SITs) in this study and their worldwide distribution according SITVIT2 database
| SIT (Clade) Octal Number1 |
Total (%) in this study | Distribution in Regions with ≥5% of a given SITs2 | Distribution in countries with ≥5% of a given SITs3 |
|---|---|---|---|
| 33 (LAM3) 776177607760771 |
43 (20.9) | AFRI-S 32.0, AMER-S 22.1, AMER-N 15.9, EURO-S 13.6, EURO-W 5.4 | ZAF 32.0, USA 15.7, BRA 8.9, ESP 8.8, ARG 5.6, PER 5.5 |
| 42 (LAM9) 777777607760771 |
21 (10.2) | AMER-S 29.8, AMER-N 16.3, EURO-S 12.8, EURO-W 7.0, AFRI-N 5.1 | USA 15.25, BRA 10.3, COL 7.9, ITA 6.7 |
| 53 (T1) 777777777760771 |
16 (7.8) | AMER-N 19.8, AMER-S 14.5, EURO-W 12.8, EURO-S 10.0, ASIA-W 8.7, AFRI-S 6.5 | USA 17.3, ZAF 6.4, ITA 5.1 |
| 67 (H3) 777777037720771 |
18 (8.7) | AMER-N 46.3, AMER-C 35.2, AMER-S 13.0, CARI 5.6 | USA 44.4, HND 33.3, GUF 12.9 |
| 92 (X3) 700076777760771 |
5 (2.4) | AFRI-S 50.3, AMER-N 23.0, AMER-S 9.0 | ZAF 50.3, USA 20.6, BRA 5.4 |
| 206 (LAM9) 740777607760771 |
6 (2.9) | AMER-N 50.0, AMER-C 42.9, EURO-W 7.1 | USA 50.0, HND 42.9, BEL 7.1 |
| 376 (LAM3) 376177607760771 |
12 (5.8) | AMER-N 44.7, AMER-C 25.5, AMER-S 21.3 | USA 44.68, HND 25.53, VEN 17.0 |
| 546 (X3) 700036777560771 |
5 (2.4) | AMER-N 57.1, AMER-C 35.7, AMER-S 7.1 | USA 57.1, HND 35.7, PER 7.1 |
| 1328 (H1) 777777034020771 |
5 (2.4) | AMER-C 55.6, CARI 22.2, AMER-N 22.2 | HND 55.6, USA 22.2, HTI 22.2 |
1 Predominant shared types (SITs) were defined as SITs representing 2% or more strains in this dataset (i.e., 4 strains or more strains in this study).
2 Worldwide distribution is only reported for regions with ≥5% of a given SITs as compared to their total number in the SITVIT2 database. Regions description [16]: AFRI (Africa), AMER (Americas), ASIA (Asia), EURO (Europe), and CARIB (Caribbean), subdivided in: C (Central), N (Northern), S (Southern) and W (Western).
3 Distribution by country is only shown for SITs with ≥5% in a given country: ARG (Argentina), BEL (Belgium), BRA (Brazil), COL (Colombia), ESP (Spain), GUF (French Guiana), HND (Honduras), HTI (Haiti), ITA (Italy), PER (Peru), USA (United States), VEN (Venezuela), ZAF (South Africa).