TABLE 2 .
Mean variability between clades | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Cladeb | No. of strains | Mean variability within clade | Group 1 | Group 2a | Group 2b | Group 3 | Group 4 | SZ030 | USA102 | TA003 | TA002 | CC1524 |
Group 1 | 16 | 1.45 | ||||||||||
Group 2a | 23 | 0.79 | 8.71 | |||||||||
Group 2b | 38 | 0.92 | 9.13 | 2.81 | ||||||||
Group 3 | 6 | 1.20 | 7.85 | 5.96 | 6.62 | |||||||
Group 4 | 3 | 0.18 | 8.45 | 8.44 | 8.69 | 8.16 | ||||||
SZ030 | 7 | 1.03 | 8.98 | 3.53 | 3.71 | 6.46 | 8.63 | |||||
USA102 | 3 | 1.61 | 9.75 | 9.46 | 9.61 | 9.22 | 8.16 | 9.80 | ||||
TA003 | 4 | 1.25 | 10.08 | 9.78 | 9.78 | 9.72 | 9.89 | 9.69 | 2.99 | |||
TA002 | 4 | 2.3 | 10.00 | 10.52 | 10.96 | 9.85 | 9.82 | 10.51 | 10.53 | 10.67 | ||
CC1524 | 6 | 1.01 | 10.74 | 11.20 | 11.67 | 10.73 | 11.68 | 11.46 | 11.19 | 11.53 | 7.37 | |
UB246 | 2 | 0.60 | 13.74 | 13.89 | 14.17 | 14.13 | 14.88 | 14.07 | 13.02 | 13.78 | 14.28 | 14.21 |
Variability is expressed as the percent difference in the 1,885-base-long concatenated partial sequences of the cts, gapA, gyrB, and rpoD genes.
Clades refer to branches on the phylogenetic tree in Fig. 1.