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. Author manuscript; available in PMC: 2010 Aug 23.
Published in final edited form as: Annu Rev Genomics Hum Genet. 2009;10:387–406. doi: 10.1146/annurev.genom.9.081307.164242

Table 2.

Recommended Choices of HapMap Reference Panel Haplotypes for Imputing Genotypes in Human Genome Diversity Panel Different Samples …

These Reference Panel Haplotypes… … Are Best for Imputing Genotypes in these Human Genome Diversity Panel Samples:
CEU Europe: Orcadian, Basque, French, Italian, Sardinian
Middle East: Druze
CHB+JPT East Asia: Han, Han-Nchina, Dai, Lahu, Miao, Oroqen, She, Tujia, Tu, Xibo, Yi, Mongola*, Naxi,Japanese
YRI Africa: Bantu, Yoruba, San, Mandenka, MbutiPygmy, BiakaPygmy
Combined (CEU, CHB, JPT, YRI) Europe: Adygei, Russian, Tuscan
Middle East: Mozabite, Bedouin, Palestinian
Asian: Balochi, Brahui, Makrani, Sindhi, Pathan, Burusho, Hazara, Uygur, Kalash
East Asia: Daur, Hezhen, Mongola*, Cambodian, Yakut
Oceania: Melanesian, Papuan
Americas: Colombian, Karitiana, Surui, Maya, Pima
*

Tie. The Human Genome Diversity Panel Mongola samples are equally well imputed using either the combined HapMap samples (CEU, CHB, JPT and YRI) or just the CHB+JPT samples as a reference. This analysis summarized in this table is adapted from (59). The analysis used estimated haplotypes from (104) and genotype data from (19).