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. Author manuscript; available in PMC: 2010 Aug 23.
Published in final edited form as: Nature. 2009 Apr 28;459(7246):569–573. doi: 10.1038/nature07953

Figure 1. AK123120: example of overrepresented CNVs.

Figure 1

AK123120 chromosome 2 (chr2): 12,986,750–13,291,000 divided into subsections with headers for ACC CNVs, AGRE CNVs, AGRE Affymetrix validation CNVs, and control CNVs. The AGRE Affymetrix Replication track is on the basis of genome-wide 5.0 SNP genotyping data from the Broad Institute (see Supplementary Methods and Acknowledgements), and were generated using the PennCNV-Affy algorithm (see Supplementary Methods), to serve as a further means to validate the Illumina-based CNV calls. SNP and copy number (CN) probe coverage are shown as blue lines across the top. Produced with custom tracks listing CNV calls uploaded to http://genome.ucsc.edu. Figures for all loci are included in Supplementary Information.