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. 2010 Apr 18;38(15):5088–5104. doi: 10.1093/nar/gkq236

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© The Author(s) 2010. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Schematic alignment of pT26-2 genome with integrated elements in Thermococcales and Methanococcales genomes. Thermococcus kodakaraensis virus-related regions (TKV1, TKV2 and TKV3), P. horikoschii (PHV1), T. gammatolerans (TGV1), M. maripaludis strain S2 (MMPV1), M. maripaludis strain C7 (MMC7V1 and MMC7V2) and strain C6 (MMC6V1), and M. voltae (MVV1). ORFs are indicated as arrows. Yellow ORFs represent genes of fragments of genes encoding an integrase related to the SSV1 integrase, and blue bars indicate tRNA genes. Brown ORFs share sequence similarities with RepA proteins encoded by the Sulfolobus plasmids pTIK4 et pORA1 (t262-22 and TK0587). Pink ORFs are homologous with genes encoding integrases of XerCD family, whereas mauve ORFs are homologous to genes encoding resolvases. Among the integrated elements represented here, ORFs encoding homologous proteins with pT26-2 are linked together with green bands.