Table 1. PCR primers and conditions.
Set | Forward primer | Reverse primer | Gene region | Annealing temperature (°C) | Product size (bp) |
---|---|---|---|---|---|
FOXE3 primers [3] | |||||
1 |
tgtccatataaagcgggtcg |
atgtacgagtagggcggctt |
Exon 1 (N-terminus) |
56 |
298 |
2 |
ttctctggcttccctgccct |
tcggtgatgaagcggtagat |
Exon 1 (N-terminus, forkhead domain) |
57 |
271 |
3 |
aagccgccctactcgtacat |
tcgttgagcgtgagattgtg |
Exon 1 (Forkhead domain) |
56 |
170 |
4 |
ttcatcaccgaacgctttgc |
aggaagctgccgttgtcgaa |
Exon 1 (Forkhead domain) |
56 |
185 |
5 |
aagggcaactactggacgct |
tagctccggctgcaggttca |
Exon 1 (Forkhead domain, C-terminus) |
55 |
267 |
6 |
tctgttcagcgtcgacagc |
acaggtcgcacaggtgcct |
Exon 1 (C-terminus) |
55 |
352 |
PAX6 primers [37] | |||||
1 |
ctcatttcccgctctggttc |
aagagtgtgggtgaggaagt |
Exon 1 |
60 |
197 |
2 |
ttatctctcactctccagcc |
aagcgagaagaaagaagcgg |
Exon 2 |
60 |
276 |
3 |
tcagagagcccatcgacgtat |
ctgtttgtgggttttgagcc |
Exon 3 |
60 |
193 |
4 |
ttgggagttcaggcctacct |
gaagtcccagaaagaccaga |
Exon 4 |
60 |
153 |
5 |
cctcttcactctgctctctt |
atgaagagagggcgttgaga |
Exon 5 |
60 |
257 |
5a |
tgaaagtatcatcatatttgtag |
gggaagtggacagaaaacca |
Exon 5a |
55 |
237 |
6 |
gtggttttctgtccacttcc |
aggagagagcattgggctta |
Exon 6 |
60 |
299 |
7 |
caggagacactaccatttgg |
atgcacatatggagagctgc |
Exon 7 |
60 |
252 |
8 |
gggaatgttttggtgaggct |
caaagggccctggctaaatt |
Exon 8 |
60 |
371 |
9 |
gtagttctggcacaatatgg |
gtactctgtacaagcacctc |
Exon 9 |
60 |
206 |
10 |
gtagacacagtgctaacctg |
cccggagcaaacaggtttaa |
Exon 10 |
60 |
243 |
11 |
ttaaacctgtttgctccggg |
ttatgcaggccaccaccagc |
Exon 11 |
60 |
208 |
12 |
gctgtgtgatgtgttcctca |
tgcagcctgcagaaacagtg |
Exon 12 |
60 |
227 |
13 |
catgtctgtttctcaaaggga |
gaacaattaacttttgctggcc |
Exon 13 |
55 |
957 |
PITX2 primers [24] | |||||
1a |
ttggctcctaagtgcccc |
ccagactcgcattatctcac |
Exon 1a |
56 |
596 |
1b |
cttgacacttctctgtcagg |
aagcgggaatgtctgcagg |
Exon 1b |
56 |
667 |
2 |
tagtctcatctgagccctgc |
cactggcgatttggttctga |
Exon 2 |
56 |
282 |
3 |
acgcctctctccgcacgt |
ttcttgcgctttcgcccga |
Exon 3 |
56 |
258 |
4 |
cagctcttccacggcttct |
ttctctcctggtctacttgg |
Exon 4 |
56 |
374 |
5a |
gtaatctgcactgtggcatc |
ctgtgggtgcggctcaca |
Exon 5 |
56 |
627 |
5b |
ctgagactgaaagcaaagca |
ctcccatgaaataaaacacattt |
Exon 5 |
56 |
787 |
PITX3 primers [31] | |||||
1 |
cctggtctgccataaagtga |
attctcgacctgttcccaag |
Exon 1 |
55 |
343 |
2 |
acgcagccccagctttac |
aagccagcgcatattctcc |
Exon 2 |
55 |
395 |
3 |
gtgcaggacataacagcttc |
gagcagaggctggaggttg |
Exon 3 |
55 |
528 |
4a |
ctctagccacctcatctcg |
aggcataagggcaggacac |
Exon 5 |
55 |
524 |
4b | agacctttccattcgccttc | agtcaaaatgaccccagtcc | Exon 5 | 55 | 483 |