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. 2010 Aug 22;16:1705–1711.

Table 1. PCR primers and conditions.

Set Forward primer Reverse primer Gene region Annealing temperature (°C) Product size (bp)
FOXE3 primers [3]
1
tgtccatataaagcgggtcg
atgtacgagtagggcggctt
Exon 1 (N-terminus)
56
298
2
ttctctggcttccctgccct
tcggtgatgaagcggtagat
Exon 1 (N-terminus, forkhead domain)
57
271
3
aagccgccctactcgtacat
tcgttgagcgtgagattgtg
Exon 1 (Forkhead domain)
56
170
4
ttcatcaccgaacgctttgc
aggaagctgccgttgtcgaa
Exon 1 (Forkhead domain)
56
185
5
aagggcaactactggacgct
tagctccggctgcaggttca
Exon 1 (Forkhead domain, C-terminus)
55
267
6
tctgttcagcgtcgacagc
acaggtcgcacaggtgcct
Exon 1 (C-terminus)
55
352
PAX6 primers [37]
1
ctcatttcccgctctggttc
aagagtgtgggtgaggaagt
Exon 1
60
197
2
ttatctctcactctccagcc
aagcgagaagaaagaagcgg
Exon 2
60
276
3
tcagagagcccatcgacgtat
ctgtttgtgggttttgagcc
Exon 3
60
193
4
ttgggagttcaggcctacct
gaagtcccagaaagaccaga
Exon 4
60
153
5
cctcttcactctgctctctt
atgaagagagggcgttgaga
Exon 5
60
257
5a
tgaaagtatcatcatatttgtag
gggaagtggacagaaaacca
Exon 5a
55
237
6
gtggttttctgtccacttcc
aggagagagcattgggctta
Exon 6
60
299
7
caggagacactaccatttgg
atgcacatatggagagctgc
Exon 7
60
252
8
gggaatgttttggtgaggct
caaagggccctggctaaatt
Exon 8
60
371
9
gtagttctggcacaatatgg
gtactctgtacaagcacctc
Exon 9
60
206
10
gtagacacagtgctaacctg
cccggagcaaacaggtttaa
Exon 10
60
243
11
ttaaacctgtttgctccggg
ttatgcaggccaccaccagc
Exon 11
60
208
12
gctgtgtgatgtgttcctca
tgcagcctgcagaaacagtg
Exon 12
60
227
13
catgtctgtttctcaaaggga
gaacaattaacttttgctggcc
Exon 13
55
957
PITX2 primers [24]
1a
ttggctcctaagtgcccc
ccagactcgcattatctcac
Exon 1a
56
596
1b
cttgacacttctctgtcagg
aagcgggaatgtctgcagg
Exon 1b
56
667
2
tagtctcatctgagccctgc
cactggcgatttggttctga
Exon 2
56
282
3
acgcctctctccgcacgt
ttcttgcgctttcgcccga
Exon 3
56
258
4
cagctcttccacggcttct
ttctctcctggtctacttgg
Exon 4
56
374
5a
gtaatctgcactgtggcatc
ctgtgggtgcggctcaca
Exon 5
56
627
5b
ctgagactgaaagcaaagca
ctcccatgaaataaaacacattt
Exon 5
56
787
PITX3 primers [31]
1
cctggtctgccataaagtga
attctcgacctgttcccaag
Exon 1
55
343
2
acgcagccccagctttac
aagccagcgcatattctcc
Exon 2
55
395
3
gtgcaggacataacagcttc
gagcagaggctggaggttg
Exon 3
55
528
4a
ctctagccacctcatctcg
aggcataagggcaggacac
Exon 5
55
524
4b agacctttccattcgccttc agtcaaaatgaccccagtcc Exon 5 55 483