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. 2010 Aug 24;5(8):e12368. doi: 10.1371/journal.pone.0012368

Table 1. Effect of spacer length in the DNA bridge on the ligation efficiency.a .

Yield (%)
2h 6h 20h
BRIDGE OLIGO LIGATION ADENYLATE LIGATION ADENYLATE LIGATION ADENYLATE
A0G 0.4 12 5.8 17 19 9.9
A1G 15 36 69 12 87 3.6
A2G 31 37 84 7.3 91 2.9
A3G 11 14 39 7.6 63 6.8
A4G 2.8 13 20 11 48 4.6
A6G 0.7 6.7 1.4 8.5 9.1 10
A8G 0.0 6.0 0.0 6.6 0.8 6.8
A10G 0.0 5.9 0.0 6.9 0.1 11
T1G 9.9 66 51 41 87 6.0
T2G 86 8.5 93 3.7 94 3.2
T3G 31 32 84 7.0 92 2.6
T4G 20 48 79 14 92 2.7
T6G 10 44 59 24 88 3.6
T8G 1.6 21 8.1 37 43 20
T10G 0.0 10 0.6 19 6.0 30
HEG-G 11 37 42 35 69 29
a

Reactions using dCHr8 were performed at 20°C using 3.3 µM [32P]-labeled dCHr8, 4.1 µM of capture oligo and 4.1 µM of the indicated bridging template. All bridging oligos contained dG in the pairing position across from the tethered dC.