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Penetrance probabilities (f(mi | ui): probabilities of observed marker genotypes (mi) conditional on the true genotype (ui) (“–” denotes missing genotype)
| Genotype error rate 0% | Genotype error rate 1% | ||||||
|---|---|---|---|---|---|---|---|
| ui\mi | aa | Aa | AA | – | aa | Aa | AA |
| aa | 1 | 0 | 0 | 1 | 0.99 | 0.005 | 0.005 |
| aA | 0 | 1 | 0 | 1 | 0.005 | 0.99 | 0.005 |
| Aa | 0 | 1 | 0 | 1 | 0.005 | 0.99 | 0.005 |
| AA | 0 | 0 | 1 | 1 | 0.005 | 0.005 | 0.99 |
Two different genotyping error rates are assumed.
