TABLE 5.
Results from genotype and phase imputation by FastPhase (FP) and long-range phasing (LRP) for generations G3, G4, and G5 in case I
| Missing genotype rate (%) | No. imputeda |
No. of errors |
||
|---|---|---|---|---|
| FP | LRP | FP | LRP | |
| Phase imputation | ||||
| 5 | 64,882 | 56,435 | 5,490 | 3,297 |
| 10 | 61,394 | 52,603 | 5,096 | 3,313 |
| 15 | 57,923 | 49,284 | 5,166 | 3,066 |
| Genotype imputation | ||||
| 5 | 7,442 | 1,325 | 340 | 6 |
| 10 | 14,938 | 2,222 | 671 | 15 |
| 15 | 22,391 | 1,962 | 1,029 | 34 |
a
FastPhase imputes all genotypes (phases); i.e., the number of imputed genotypes equals the number of missing genotypes (phases).