TABLE 1.
Distribution of SNP markers across 36 candidate genes sequenced in the Batlow discovery population
| Gene | Name | Amplicons | L | SNPs |
|---|---|---|---|---|
| α-Expansin | αexp1 | 4 | 1,492 | 7 |
| α-Tubulin | αtub | 1 | 788 | 2 |
| Aquaporin | porin | 1 | 1,919 | 5 |
| COBL4 (Arabidopsis thaliana) | cobl4 | 2 | 2,642 | 4 |
| Dehydrin 2 (A. thaliana) | dh2 | 1 | 606 | 2 |
| Dehydrin 7/8 (A. thaliana) | dh7/8 | 1 | 232 | 2 |
| rac13 GTPase (G. hirsutism) | rac13 | 4 | 3,372 | 6 |
| Caffeate 3-O-methyltransferase 2 (P. taeda) | comt2 | 2 | 1,290 | 2 |
| Chloroplastic superoxide dismutase | sodchl | 1 | 720 | 3 |
| Cinnamate 4-hydroxylase | c4h | 1 | 440 | 2 |
| Cinnamoyl-CoA reductase | ccr1 | 2 | 2,763 | 2 |
| Cinnamyl-alcohol dehydrogenase | cad | 3 | 2,111 | 11 |
| Korrigan (endo-1,4-b-D-glucanase) | kor | 3 | 2,523 | 5 |
| Katanin (fragile fiber mutant 2) (A. thaliana) | fra2 | 1 | 786 | 3 |
| Glycine hydroxymethyltransferase | glyhmt | 2 | 1,300 | 5 |
| hdzip transcription factor | athb8 | 2 | 1,621 | 7 |
| hdzip transcription factor | athbx | 1 | 470 | 2 |
| Peroxidase precursor | perox | 1 | 812 | 1 |
| Phenylcoumaran benzylic ether reductase | pcber | 1 | 572 | 3 |
| Proline-rich protein | prp | 1 | 643 | 6 |
| Cellulose synthase 3 (P. radiata) | cesa1 | 10 | 7,649 | 19 |
| Cellulose synthase 7 (P. radiata) | cesa2 | 1 | 716 | 1 |
| Cellulose synthase 1 (P. radiata) | cesa3 | 3 | 2,244 | 6 |
| lim 1 transcription factor (P. taeda) | lim1 | 2 | 1,702 | 2 |
| myb 1 transcription factor (P. taeda) | myb1 | 1 | 1,361 | 2 |
| myb 4 transcription factor (P. taeda) | myb4 | 2 | 1,256 | 2 |
| Phenylalanine ammonia lyase 1 (P. taeda) | pal 1 | 3 | 2,128 | 6 |
| Arabinogalactan protein 4 (P. taeda) | agp4 | 2 | 1,749 | 6 |
| Arabinogalactan protein 6 (P. taeda) | agp6 | 1 | 497 | 1 |
| Glycine-rich cell wall protein | lp5 | 1 | 735 | 1 |
| S-adenosyl-L-homocysteine hydrolase | sahh1 | 1 | 650 | 3 |
| S-adenosyl-L-methionine synthase 1 (P. taeda) | sam1 | 2 | 1,342 | 6 |
| S-adenosyl-L-methionine synthase 2 (P. taeda) | sam2 | 2 | 1,399 | 6 |
| Sucrose synthase | susy | 2 | 1,043 | 2 |
| Unknown protein | nh3702 | 1 | 287 | 1 |
| Xyloglucan endotransglycosylase 1 (P. taeda) | xet1 | 3 | 2,328 | 5 |
| Total | 54,188 | 149 |
L, length of sequenced region.