TABLE 3.

Shortlisted SNP assocaitions identified in the Batlow association population

SNP	Gene	Trait	Description	Genotype	Minor allele	P-value	q-value	FST	Bayes factor	Año Nuevoa	Cambriaa	Montereya	RSQ	% trait
2b	rac13	Trait 41	MFA	g/c	0.072	0.0015	0.0721	0.303	33.96	—	0.041	—	6.5	12.8
2b	rac13	Trait 50	MFA	g/c	0.072	0.0035	0.0888	0.303	33.96	—	0.026	—	6.3	13.3
2b	rac13	Trait 52	MFA	g/c	0.072	0.0055	0.0888	0.303	16.96	—	0.043	—	6.4	14.7
11b	porin	PCA2	PCA2	g/a	0.053	0.0025	0.0721	0.038	33.98	0.006	—	0.013	3.1	-
11b	porin	Trait 35	Coarseness	g/a	0.053	0.0045	0.0888	0.038	25.43	0.017	—	0.008	3.1	13.3
45c	comt	Trait 53	MOE	g/a	0.219	0.0065	0.0888	0.001	12.35	—	0.006	—	2.8	16.3
50b	αexpan	Trait 18	Wall thickness	g/t	0.367	0.0025	0.0721	0.006	10.04	—	0.054	—	3	2.2
50b	αexpan	Trait 37	Wall thickness	g/t	0.367	0.0045	0.0888	0.006	10.04	—	0.028	—	2.7	3.1
57b	lp5	Trait 18	Wall thickness	a/g	0.183	0.0020	0.0721	0.035	10.02	0.002	—	0.013	3.2	4.6
57b	lp5	Trait 37	Wall thickness	a/g	0.183	0.0055	0.0888	0.035	7.50	0.004	—	0.014	3.6	1.1
57b	lp5	Trait 39	Specific surface area	a/g	0.183	0.0065	0.0888	0.035	5.99	0.004	—	0.003	3.7	4.9
57b	lp5	Trait 19	Specific surface area	a/g	0.183	0.0075	0.0927	0.035	5.99	0.003	—	0.008	3.3	4.1
60b	pal1	Trait 10	Density	c/t	0.141	0.0005	0.0433	0.064	42.02	—	—	0.007	2	6.7
69b	athb8	Trait 32	Cell population	c/g	0.139	0.0080	0.0944	0.012	88.12	—	—	0.083	2.7	11.5
84b	cesa3	Trait 59	No. juvenile rings	t/c	0.016	0.0075	0.0927	0.111	7.32	—	0.013	—	2.3	16.1
118b	rac13	Trait 16	Cell population	a/g	0.091	0.0065	0.0888	0.091	23.62	0.048	—	0.012	2.8	0.7
118b	rac13	Trait 33	Cell population	a/g	0.091	0.0060	0.0888	0.091	14.12	0.04	—	0.01	2.9	15.2
131b	sahh	PCA3	PCA3	c/t	0.107	0.0015	0.0721	0.068	60.09	0.062	—	—	3.1	—

R_SQ, proportion of the phenotypic variance attributed to SNP; % trait, percentage change in trait mean associated with SNP.

^aP-values.

^bSilent SNP.

^cNonsynonomous SNP.