TABLE 4.
Significant associations identified from 23 SNPs retested in the Flynn validation population
SNP | Gene | Trait | Description | Genotype | P-value | q-value | R |
---|---|---|---|---|---|---|---|
60a | pal1 | Trait 81 | Density | c/t | 0.0010 | 0.0435 | 0.039 |
60a | pal1 | Trait 71 | Ring Width | c/t | 0.0035 | 0.0435 | 0.037 |
60a | pal1 | Trait 79 | Density | c/t | 0.0320 | 0.0653 | 0.029 |
60a | pal1 | Trait 65 | Density | c/t | 0.0330 | 0.0653 | 0.030 |
64 | pcber2 | Trait 65 | Density | g/a | 0.0045 | 0.1798 | 0.035 |
64 | pcber2 | Trait 8 | Density | g/a | 0.0155 | 0.1914 | 0.030 |
64 | pcber2 | Trait 79 | Density | g/a | 0.0245 | 0.1914 | 0.030 |
64 | pcber2 | Trait 81 | Density | g/a | 0.0305 | 0.1914 | 0.032 |
146 | susy | Trait 85 | MFA | g/t | 0.0015 | 0.1914 | 0.038 |
146 | susy | Trait 40 | MFA | g/t | 0.0300 | 0.1914 | 0.029 |
146 | susy | Trait 66 | MFA | g/t | 0.0415 | 0.2188 | 0.028 |
146 | susy | Trait 84 | MFA | g/t | 0.0495 | 0.2393 | 0.029 |
R, proportion of the additive genetic variance controlled by SNP.
SNP shortlisted in discovery population.