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. Author manuscript; available in PMC: 2010 Aug 25.
Published in final edited form as: Endocrine. 2008 Nov 20;35(1):101–111. doi: 10.1007/s12020-008-9129-z

Table 2.

Probes used in EMSA (the binding motifs are highlighted by bold letters; mutated nucleotides were in lower case)

Probes (i.e., Oligos. In cold probe, there was not biotin labeled) Sequences
Wild type for region 1
 Sense 5′-biotin-TGATGTCTGGTGAGGGCCTGCTTTCTGGTTCACAG
 Antisense 5′-biotin-CTGTGAACCAGAAAGCAGGCCCTCACCAGACATCA
Mutant 1 for region 1 site 1
 Sense 5′-biotin-TGATGTCTccTGAGGGCCTGCTTTCTGGTTCACAG
 Antisense 5′-biotin-CTGTGAACCAGAAAGCAGGCCCTCAggAGACATCA
Mutant 2 for region 1 site 2
 Sense 5′-biotin-TGATGTCTGGTGAGGGCCTGCTTTCTccTTCACAG
 Antisense 5′-biotin-CTGTGAAggAGAAAGCAGGCCCTCACCAGACATCA
Wild type for region 5
 Sense 5′-biotin-GGCTCGGAGCCACCGCCCCGCCGGCGCCC
 Antisense 5′-biotin-GGGCGCCGGCGGGGCGGTGGCTCCGAGCC
Mutant type for region 5
 Sense 5′-biotin-GGCTCGGAGCCAggGCCCCGCCGGCGCCC
 Antisense 5′-biotin-GGGCGCCGGCGGGGCccTGGCTCCGAGCC