Table 3.
Gene | Best SNP | SNP P-value | Number of SNPs | Effective number of SNPs | Gene-centric test | HWEa |
---|---|---|---|---|---|---|
KIAA1797 | rs7875153 | 0.00008 | 69 | 25 | 0.002 | 0.47 |
— | rs4446809 | 0.00014 | — | — | 0.003 | 0.46 |
— | rs10964759 | 0.00045 | — | — | 0.010 | 0.61 |
IFNE1 | rs1125488 | 0.02503 | 3 | 1 | 0.025 | 0.10 |
LOC729983 | rs7853123 | 0.00369 | 11 | 8 | 0.029 | 0.08 |
LOC402359 | rs7848524 | 0.00098 | 8 | 5 | 0.049 | 0.02 |
LOC392298 | rs3913107 | 0.00545 | 17 | 12 | 0.065 | 0.15 |
LOC646505 | rs4977348 | 0.00535 | 15 | 12 | 0.066 | 0.49 |
IFNA16 | rs12337907 | 0.02288 | 3 | 3 | 0.068 | 0.03 |
PLAA | rs12003612 | 0.02711 | 12 | 4 | 0.108 | 0.49 |
SLC24A2 | rs10757082 | 0.00295 | 63 | 38 | 0.112 | 0.12 |
LOC402360 | rs1036107 | 0.00657 | 30 | 20 | 0.131 | 0.20 |
MTAP | rs10117507 | 0.01581 | 28 | 9 | 0.142 | 0.03 |
ELAVL2 | rs4977886 | 0.00785 | 50 | 30 | 0.236 | 0.53 |
LOC392288 | rs11792752 | 0.01486 | 22 | 17 | 0.253 | 0.99 |
C9orf82 | rs10511793 | 0.04801 | 18 | 6 | 0.288 | 0.30 |
C9orf11 | rs911602 | 0.04525 | 14 | 8 | 0.362 | 0.89 |
MOBKL2B | rs4879507 | 0.01262 | 68 | 41 | 0.517 | 0.48 |
TEK | rs7035592 | 0.01786 | 71 | 42 | 0.750 | 0.56 |
MLLT3 | rs7868612 | 0.02751 | 50 | 29 | 0.798 | 0.35 |
IFNA1 | rs7864960 | 0.03402 | 1 | — | — | 0.93 |
IFNA6 | rs660675 | 0.02922 | 1 | — | — | 0.83 |
LOC729932 | rs7853123 | 0.00369 | 1 | — | — | 0.08 |
Significant SNPs in bold.
aHWE, Hardy–Weinberg equilibrium P-value for the best SNP.