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. 2010 Sep;20(9):1297–1303. doi: 10.1101/gr.107524.110

Figure 2.

Figure 2.

Shared memory parallel tree-reduction in the GATK. Each thread executes independent MapReduce calls on a single instance of the analysis walker, and the GATK uses the user specified tree-reduce function to merge together the reduce results of each thread in sequential order. The final in-order reduce result is returned.