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. 2010 Sep;20(9):1297–1303. doi: 10.1101/gr.107524.110

Figure 5.

Figure 5.

Parallelization of genotyping in the GATK. (A) 1000 Genomes Project sample NA12878s chromosome 1 was genotyped using both shared memory parallelization and distributed parallelization methods. Both methods follow a near exponential curve (B) as the processor count was increased, and using the distributed methodology it was possible to see elapsed time gains out to 50 processors.