Table 1. Genes identified in a comparison between strains 81116 and M1 as unique relative to the comparator.

	Number of Proteins
BLASTP %-identity	M1 proteome (1624 proteins) vs. 81116 proteome	81116 proteome (1623 proteins) vs. M1 proteome
100%	1166	1194
≥90%	392	322
≥80%	23	19
≥70%	7	13
≥60%	6	8
≥50%	2	11
≥40%	0	4
≥30%	4	5
≥20%	5	11
<20%	19	36
	Proteins with <20% identity in the other genome
	CJM1_0032, CJM1_0040, CJM1_0041, CJM1_0055, CJM1_0056, CJM1_0057, CJM1_0138, CJM1_0278, CJM1_0414, CJM1_0728, CJM1_0745, CJM1_1118, CJM1_1119, CJM1_1120, CJM1_1372, CJM1_1373, CJM1_1375, CJM1_1381, CJM1_1382	C8J_0035, C8J_0036, C8J_0063, C8J_0132, C8J_0133 , C8J_0154, C8J_0265, C8J_0266, C8J_0267, C8J_0272, C8J_0273, C8J_0274 , C8J_0275, C8J_0321, C8J_0529, C8J_0651, C8J_0776, C8J_0852, C8J_0918, C8J_1080, C8J_1081, C8J_1083, C8J_1329, C8J_1330, C8J_0131, C8J_1332, C8J_1334, C8J_1335, C8J_1337, C8J_1338, C8J_1340, C8J_1341, C8J_1342, C8J_1456, C8J_1458, C8J_1459

*Gene names given in bold refer to the sequences having matches to verified proteins in UniProtKB/Swiss-Prot, while italics indicate a match to the NCBI nr database.