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. 2010 Aug 26;6(8):e1000913. doi: 10.1371/journal.pcbi.1000913

Figure 4. Projection of Ubc9 conformations on principal components.

Figure 4

The PCs are given in Å. The proportion of all trajectory accounted for by the PCs up to current PC is given in parenthesis on each axis. (A–C) x-axis is PC1, y-axis PC2. (A) Ubc9 conformations from the Ubc9-SUMO-RanBP2 simulation, projected on PC1 and PC2. Members of cluster 1 in magenta, cluster 2 in cyan, cluster 3 in yellow. (B) Ubc9 conformations from Ubc9-SUMO simulation, projected on PC1 and PC2. Members of cluster 1 in red, cluster 2 in green, cluster 3 in blue. (C) Merged plot of A and B, with same color coding. (D) The distribution of cluster members in time, x-axis time, y-axis cluster number. Upper lane is Ubc9-SUMO-RanBP2, and lower lane is Ubc9-SUMO.