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. 2010 Aug 10;10:244. doi: 10.1186/1471-2148-10-244

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Copyright ©2010 Baele et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Ancestral repeats: Comparison of substitution patterns between a coupled and a decoupled root distribution. (a) Comparison of the substitution patterns of our context-dependent model with context-dependent model frequencies with a decoupled and coupled first-order Markov chain at the ancestral root sequence. (b) Comparison of the substitution patterns between the 'human clade' and 'baboon clade'. (c) Comparison of the substitution patterns between the 'human clade' and 'marmoset clade'. (d) Comparison of the substitution patterns between the 'marmoset clade' and 'baboon clade'. Colour coding is identical to Figures 3, 4 and 5.