Table 5.
Pseudogenes - First-order root distribution estimates
| Root | ||||
|---|---|---|---|---|
| X | πX|A | πX|C | πX|G | πX|T |
| A | 0.3231 [0.3025; 0.3444] |
0.1659 [0.1492; 0.1833] |
0.2315 [0.2124; 0.2508] |
0.2795 [0.2589; 0.3005] |
| C | 0.3440 [0.3160; 0.3727] |
0.2243 [0.2003; 0.2497] |
0.0361 [0.0236; 0.0509] |
0.3956 [0.3678; 0.4243] |
| G | 0.3321 [0.3060; 0.3591] |
0.1730 [0.1526; 0.1949] |
0.2273 [0.2041; 0.2511] |
0.2676 [0.2430; 0.2925] |
| T | 0.2486 [0.2290; 0.2686] |
0.1886 [0.1713; 0.2068] |
0.2547 [0.2350; 0.2748] |
0.3081 [0.2869; 0.3291] |
Estimates (mean and accompanying 95% credibility interval) for the sixteen sets of base frequencies at the ancestral root sequence under the context-dependent model with context-dependent model frequencies. The probabilities are grouped by the identity of the immediately preceding site.