Table 1. Influence of the peak filtering methods on the correlation coefficients between peak values and their predicted values in the test dataset.
Filtering method | #Peaks (STAT1/Pol II) | STAT1 | Pol II |
None | / | 0.50 | 0.44 |
Promoter proximity | / | 0.41 | 0.53 |
Q-value | / | 0.65 | 0.66 |
The correlation coefficients are averaged in 30-fold cross-validation.