Table 5. List of putative RNA Polymerase II binding motifs identified by linear least squares regression.

RNA Polymerase II	Normalized coef.
T[AG]A[GC][TAG]CA[GCT]A[AC]AA	1.0
A[GA]AA[AC][CA]AA[AC]AAA	0.86
C[ACT][GT][CG][CT][TA]CC[AGT]CC[TA]	0.81
C[CT][CG][AT]GGCTGG[AG]G	0.74
TTTCTGC[CT][CT]TT[GT]	0.74
GGAGGGAGGC[AG]G	0.69
AC[AC][CA][AC][AT][AG]AGAAA	0.64
T[TA]T[TC][CA]CAGACT[AT]	0.62
TTTGT[CT][TA]T[TG][AC][AT]T	0.62
TT[TAC]TTT[CT]TT[TC]TT	−0.61

The known Downstream Promoter Element and Initiator site motifs are shown in boldface.