Table 8. List of putative STAT1 binding motifs identified by partial least squares regression.
STAT1 | Normalized coef. |
CA[TC]GTGACT[TG]C | 1.0 |
[TG]G[GTA][GC][AG]TTT[CA]C[AGC][GA]GAA[AC][TG]G[GA][GC] | 0.80 |
TTC[CT][TG][GA]GAAAT[GC][CA][CA][CAT][AT][TCG][CG][CT] | 0.58 |
[CT][TC]CA[GT]TTCCAGGAA[AT]T[CG][CAT]C[CT] | 0.56 |
[GA][AG]A[AG][AT][CTG][CA]A[GT][CG]T[GT][CG][CA]T[TG][CT][CGT]T | 0.50 |
TCACA[TG]G[ACG] | 0.42 |
GGAGGGCG | −0.41 |
G[TGC][CGT][AT][TG]TTCC[TCA][GA][GT]AA[AG] | 0.41 |
TT[CA]C[TAG][GA]GAA[GA]T | 0.40 |
A[TA]TTCC[CT][GA]GAA[AC]T[CG][AC] | 0.39 |
The classical GAS motifs are shown in boldface.