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. Author manuscript; available in PMC: 2011 May 1.
Published in final edited form as: Expert Rev Mol Diagn. 2010 Jul;10(5):651–665. doi: 10.1586/erm.10.45

Table 2.

List of commonly used microsatellite instability markers.

Microsatellite marker Gene near marker/GenBank number Location of the repeat Repeat motif
BAT25 c-kit 4q12 (intron 16) TTTT.T.TTTT.(T)7.A(T)25
BAT26 MSH2 2p16.3–p21 (intron 5) (T5)......(A)26
BAT40 HSD3B2 1p13.1 TTTT.TT..(T)7................TTTT.(T)40
NR21 SLC7A8 14q11.2 (5′ UTR) (T)21
NR22 HUMB5A 11q24–25 (3′ UTR) (T)22
NR24 ZNF2 2q11.2 (3′ UTR) (T)24
MONO-27 MAP4K3 2q21 (intron 13) (A)27
D2S123 MSH2 2p16 (CA)13TA(CA)15(T/GA)7
D5S346 APC 5q21/22 (CA)26
D17S250 BRCA1 17q11.2–q12 (TA)7..............................(CA)24
D10S197 GAD2 10p (intron 7) CACCAGA(CA)7.A.A.(CA)12(AGAAA)2
PENTA C AL138752 21q22.3 (AAAAG)3–15
PENTA D AC003656 9p12–13.3 (AAAAG)2–17