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. Author manuscript; available in PMC: 2010 Aug 30.
Published in final edited form as: Neuroimage. 2009 Oct 19;49(3):2340–2351. doi: 10.1016/j.neuroimage.2009.10.027

Table 1.

Average distances and standard deviations between manual and automated segmented mouse brain structure surfaces based on MRI data. Automated segmentation was first performed using affine transformation followed by LDDMM. Data from both the wild-type (n = 6) and R6/2 (n=6, in parenthesis) mice are shown.

Brain region Affine ( mm) LDDMM (mm)
striatum 0.098 ± 0.030 (0.143 ± 0.050) 0.012 ± 0.016 (0.007 ± 0.008)
Hippocampus 0.124 ± 0.051 (0.191 ± 0.051) 0.018 ± 0.037 (0.007 ± 0.013)
Cortex 0.089 ± 0.040 (0.147 ± 0.083) 0.008 ± 0.023 (0.007 ± 0.019)
Cerebellum 0.144 ± 0.064 (0.208 ± 0.064) 0.004 ± 0.019 (0.013 ± 0.028)
Lateral ventricle 0.125 ± 0.040 (0.179 ± 0.059) 0.029 ± 0.040 (0.008 ± 0.013)