Table 1. Genes of dockerin-containing proteins in putative operons in R. flavefaciens FD-1.
Protein modulesa | Dockerin group | Expression fold changeb | ORF |
SIGN-GH9-CBM3-Doc | 1a | 4.49 | ORF01132 |
SIGN-CBM4-IgX-GH9-Doc | 1a | 6.60 | ORF01133 |
SIGN-GH43-UNK-CBM13-Doc | 1b | 0.97 | ORF00226 |
SIGN-CBM35-GH5-Doc | 1b | 2.11 | ORF00227 |
SIGN-UNK-Doc | 1b | 1.17 | ORF00228 |
SIGN-UNK-Doc | 4a | 0.60 | ORF02170 |
SIGN-UNK-Doc | 4a | 0.66 | ORF02171 |
SIGN-UNK-Doc | 4a | 1.07 | ORF02172 |
SIGN-UNK-Doc | 4a | 0.98 | ORF02173 |
SIGN-Transglutaminase like-Doc | 4b | 4.11 | ORF01263 |
SIGN-Transglutaminase like-Doc | 4b | 3.86 | ORF01264 |
SIGN-Transglutaminase like-Doc | 4b | 2.98 | ORF01265 |
SIGN-Transglutaminase like-Doc | 4b | 3.52 | ORF01266 |
SIGN-LRR-Doc | 4b | 3.87 | ORF01267 |
SIGN-LRR-Doc | 6a | 2.09 | ORF01964 |
SIGN-UNK(LbetaH-LamGL)-Doc | 6a | 1.80 | ORF01965 |
SIGN-Doc-SERPIN | 6b | 1.16 | ORF01368 |
SIGN-Doc-SERPIN | 6b | N/A | ORF01369 |
Abbreviations: sign, signal peptide; GH, glycoside hydrolase; CBM, carbohydrate-binding module; Doc, dockerin; unk, unknown; LRR, leucine-rich repeat.
Expression data was based on Berg Miller et al [24].